CHP530
Library CH
(Link to library)
Clone ID CHP530
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHP530 (CHP530Q) /CSM/CH/CHP5-B/CHP530Q.Seq.d/
ACTGTTGGCCTACTGGGCAAATTAAAATCATTAAAAATAAAAAAAATAAAAAATTTTATT
ATTTTTATTAATATTAATAATTTTCTTTTATTAATTATTATAATAGTTTTCTTTTTTTTT
TTTNATAATTTTTNATTTATAAGGTTTAATANTAATAATAATAATAANAANAXXXXXXXX
XX
sequence update 2002.10.25
Translated Amino Acid sequence
TVGLLGKLKSLKIKKIKNFIIFININNFLLLIIIIVFFFFFXNFXFIRFNXNNNNXX---


Translated Amino Acid sequence (All Frames)
Frame A:
TVGLLGKLKSLKIKKIKNFIIFININNFLLLIIIIVFFFFFXNFXFIRFNXNNNNXX---


Frame B:
llaywan*nh*k*kk*killflliliiffy*ll**fsfffxiifxl*glixiiiix---


Frame C:
cwptgqikiiknkknkkfyyfy*y**fsfinyynsflfffx*fxiykv*x*****x---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP530 (CHP530Q) /CSM/CH/CHP5-B/CHP530Q.Seq.d/ 64 7e-10
SFH605 (SFH605Q) /CSM/SF/SFH6-A/SFH605Q.Seq.d/ 44 7e-04
AHM720 (AHM720Q) /CSM/AH/AHM7-A/AHM720Q.Seq.d/ 42 0.003
SFA282 (SFA282Q) /CSM/SF/SFA2-D/SFA282Q.Seq.d/ 40 0.011
AHM354 (AHM354Q) /CSM/AH/AHM3-C/AHM354Q.Seq.d/ 40 0.011
AFA117 (AFA117Q) /CSM/AF/AFA1-A/AFA117Q.Seq.d/ 40 0.011
VHH236 (VHH236Q) /CSM/VH/VHH2-B/VHH236Q.Seq.d/ 38 0.042
VFH859 (VFH859Q) /CSM/VF/VFH8-C/VFH859Q.Seq.d/ 38 0.042
VFC411 (VFC411Q) /CSM/VF/VFC4-A/VFC411Q.Seq.d/ 38 0.042
VFC184 (VFC184Q) /CSM/VF/VFC1-D/VFC184Q.Seq.d/ 38 0.042

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CJ485099|CJ485099.1 Macaca fascicularis mRNA, clone: QtsA-12668, 5' end, expressed in testis. 46 0.22 1
CJ491629|CJ491629.1 Macaca fascicularis mRNA, clone: QtsA-19571, 5' end, expressed in testis. 46 0.22 1
CJ430307|CJ430307.1 Macaca fascicularis mRNA, clone: QbsA-10038, 5' end, expressed in brain stem. 44 0.87 1
CJ492448|CJ492448.1 Macaca fascicularis mRNA, clone: QtsA-20428, 5' end, expressed in testis. 44 0.87 1
CJ473581|CJ473581.1 Macaca fascicularis mRNA, clone: QorA-13589, 5' end, expressed in brain occipital lobe. 44 0.87 1
CJ450764|CJ450764.1 Macaca fascicularis mRNA, clone: QflA-16342, 5' end, expressed in brain frontal lobe. 44 0.87 1
CJ489772|CJ489772.1 Macaca fascicularis mRNA, clone: QtsA-17537, 5' end, expressed in testis. 34 1.9 2
CJ483465|CJ483465.1 Macaca fascicularis mRNA, clone: QtsA-10949, 5' end, expressed in testis. 42 3.4 1
CJ492357|CJ492357.1 Macaca fascicularis mRNA, clone: QtsA-20332, 5' end, expressed in testis. 42 3.4 1
CJ480509|CJ480509.1 Macaca fascicularis mRNA, clone: QtrA-16017, 5' end, expressed in brain temporal lobe. 42 3.4 1
dna update 2005.10. 3
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 55,128,478
protein update 2009. 4.11
PSORT

psg: 0.49 gvh: 0.44 alm: 0.15 top: 0.20 tms: 0.07 mit: 0.39 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.18 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
16.0 %: endoplasmic reticulum
12.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CHP530 is cyt

5' end seq. ID CHP530F
5' end seq.
>CHP530F.Seq
ACTGTTGGCCTACTGGGCAAATTAAAATCATTAAAAATAAAAAAAATAAAAAATTTTATT
ATTTTTATTAATATTAATAATTTTCTTTTATTAATTATTATAATAGTTTTCTTTTTTTTT
TTTNATAATTTTTNATTTATAAGGTTTAATANTAATAATAATAATAANAANANNNNNNNN
NN
Length of 5' end seq. 182
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -