>CHP520 (CHP520Q) /CSM/CH/CHP5-A/CHP520Q.Seq.d/
CACTGTTGGCCTACTGGTTTTTAAAAAAAAATAGNAGNAATATAGTTATATATATAACAC
ACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATAT
AATAAACACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXGTCTTGATCATC
TTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACCATTCATT
CTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTC
TCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTT
ATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAG
AAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGT
GAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTT
TTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCAC
TCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAAT
CCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTA
CTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAA
AATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCANACAGTGCCACTCGT

tvgllvfkkk*xxysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---VLIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFL
ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQV
IHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLG
ASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPXSATR

Frame A:
hcwptgf*kkixxi*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---VLIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFL
ALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQV
IHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLG
ASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPXSATR

Frame B:
tvgllvfkkk*xxysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---s*ss*ngsfhivhlrltklihhsffqplslcschqvvhqmlssslvkvlfkplsysw
lsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfiks
fipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvlg*v
plllyfylwnpfllsctlldfig*nskinsilvmvldsfxtvpl

Frame C:
llaywflkknxxniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---ldhlkmgrsisfi*g*qs*stihssnhyryvlvtrwytrcclllwsrccsnrslilg
shfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcsssh
syhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrc
lccctftygipfcflars*tslgripk*ilyw*wc*ihsxqchs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                       1314   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1314   0.0
CHP520 (CHP520Q) /CSM/CH/CHP5-A/CHP520Q.Seq.d/                       1314   0.0
CHL154 (CHL154Q) /CSM/CH/CHL1-C/CHL154Q.Seq.d/                       1314   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1312   0.0
AFB674 (AFB674Q) /CSM/AF/AFB6-D/AFB674Q.Seq.d/                       1312   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1310   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1310   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1310   0.0
AHO682 (AHO682Q) /CSM/AH/AHO6-D/AHO682Q.Seq.d/                       1306   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1314   0.0    1
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   1e-13  2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   2e-11  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   8e-11  1
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   4e-09  6
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   6e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   1e-08  3
CO121598|CO121598.1 GR__Eb02N16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 5', mRNA sequence.    72   2e-08  1
BQ403487|BQ403487.1 GA__Ed0059H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0059H07f, mRNA sequence.    72   2e-08  1
DT466948|DT466948.1 GH_CHX19K13.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX19K13 5', mRNA sequence.    72   2e-08  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   445   e-124
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   445   e-124
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   207   2e-52
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   205   2e-51
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   202   8e-51
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   201   2e-50
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   201   2e-50
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   201   3e-50
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   199   7e-50
AM494960_175(AM494960|pid:none) Leishmania braziliensis chromoso...   197   3e-49

 psg: 0.85  gvh: 0.49  alm: 0.18  top: 0.77  tms: 0.20  mit: 0.35  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHP520 is end

>CHP520F.Seq
CACTGTTGGCCTACTGGTTTTTAAAAAAAAATAGNAGNAATATAGTTATATATATAACAC
ACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATAT
AATAAACACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN

>CHP520Z.Seq
NNNNNNNNNNGTCTTGATCATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGA
CAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGG
TACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTT
GGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCA
CTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGC
TCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGT
CATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTT
ATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCAT
TGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGG
TGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAG
ACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCC
ANACAGTGCCACTCGT

>CHP520P.Seq
CACTGTTGGCCTACTGGTTTTTAAAAAAAAATAGNAGNAATATAGTTATATATATAACAC
ACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATAT
AATAAACACTCTATCATTTAATTTTAATAAAAAAAAAA----------GTCTTGATCATC
TTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACCATTCATT
CTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTC
TCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTT
ATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAG
AAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGT
GAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTT
TTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCAC
TCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAAT
CCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTA
CTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAA
AATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCANACAGTGCCACTCGT