CHP511 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHP511
Library	CH (Link to library)
Clone ID	CHP511 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15732-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHP5-A/CHP511Q.Seq.d/
Representative seq. ID	CHP511P (Link to Original site)
Representative DNA sequence	>CHP511 (CHP511Q) /CSM/CH/CHP5-A/CHP511Q.Seq.d/ TTGGCCTATGGATTGAAAAAGACATAAATATATAATAAATAATGTCAGAACCAAAACCAA CTCAACCAATCAAAGAGATTGATGAGGAAACTAAAAGAAAGAATGAAGAGAAAAAGAAAG CCAAAGAGGCAGAGAAAGCAGAGAAATTAGCAAAAATGAAAGAAAAGGAAGCTAAACAAG CAGCAGCAAAAGAAAAAGAATTACAAAATAAACTTAAAAAAGAACAAGAGAAAAAAGAAA AAGAAGCTGAAGAAAAAGAAAAACAAGAAGCTGAAGAAAAAATTGTTAGAGAACATATTG AAAAAATTTTAAAAACCCCAAAGGGTGAAAAGAAAGATGTTTCAAGTTTATTATCATCAT ATCATCCAACAGCAGTTGAATCAATTTGGTATGATTATTGGTTAGATAATGGATATTTTT CACCAGAGAAACAAATGGAGATTCAACCACATGTAGTTAAAGATAAAAAGTTTGTAATTG TTATTCCACCACCAAATGTTACAGGTAGTTTACATTTAGGACATGCATTAACCAATTCAA TTCAAGATGCAGTTGTTCGTTATCATCGTATGAAGGGTGAAGTTTGTTTATGGGTACCAG GTACAGATCATGCAGGTATTGCAACACAAGTAGTTGTAXXXXXXXXXXATTACATCCCAT TCATGCCATACNTCCCCCGAGGAGTTGTATCAATCATTACCACGTCGTCCAGAAGATGTC ATTCCAACCATTATGTTATGTCCATACCCACAATCTCAATCATGTTGGGCCAATTCTGAC ATTGAGGAAGAAATGAAACAATGTCAAGATATCATCAAATCAATTCGTTCACTTCGTGCT ACCTATACCATTCCAGCCTCTAAAAAACTTCACACTTATCTTCACGTTAAAAATCAAGAG AATCTCGAACGTTTCACTAAAAACTCTTCATTCATTCGTGTTTTAGCTTATGCCTCTGAA CTCGAAGTTTCCATTAGTGATGAATCTCGTCCTGGTTGTATCGTTAATGTTGTCAATGAA AATGTTTCAACCCTTTTAGATGTTAGAGGATCTGTTGATTTCAATCTTGAAATTGCTCGT CTCGAAACAAAGAAACAACAATTGGTCAAAAACTATGAAACTTTAGTTTCAAAAACTACC ATACCTTCTTATGATAAAGTTCCACAAAATATCAGAGATGATAATACTCAAAAAATTAAA GCTTTAGATGAAGAAATTAATATTACAAACAAAACCATTGAAAGTTTTACAAAATTAAAT ATTTAAAATTATAAATCATAATTAATAATAATAATAATAAAGTTTTAATTACTAAATTAG TAA
sequence update	2002.10.25
Translated Amino Acid sequence	glwiekdini*IMSEPKPTQPIKEIDEETKRKNEEKKKAKEAEKAEKLAKMKEKEAKQA AAKEKELQNKLKKEQEKKEKEAEEKEKQEAEEKIVREHIEKILKTPKGEKKDVSSLLSSY HPTAVESIWYDYWLDNGYFSPEKQMEIQPHVVKDKKFVIVIPPPNVTGSLHLGHALTNSI QDAVVRYHRMKGEVCLWVPGTDHAGIATQVVV--- ---ITSHSCHTSPEELYQSLPRRPEDVIPTIMLCPYPQSQSCWANSDIEEEMKQCQDIIK SIRSLRATYTIPASKKLHTYLHVKNQENLERFTKNSSFIRVLAYASELEVSISDESRPGC IVNVVNENVSTLLDVRGSVDFNLEIARLETKKQQLVKNYETLVSKTTIPSYDKVPQNIRD DNTQKIKALDEEINITNKTIESFTKLNInyksliiiiikflln**
Translated Amino Acid sequence (All Frames)	Frame A: layglkktiynkcqnqnqlnqskrlmrklkermkrkrkpkrqrkqrnqkkkrklnk qqqkkknykinlkknkrkkkkklkkkknkklkkkllenilkkfkpqrvkrkmfqvyyhh iiqqqlnqfgmiigimdifhqrnkwrfnhmlkikslllfhhqmlqvvyidmhpiq fkmqlfviivrvkfvygyqvqimqvlqhkl--- ---ITSHSCHTSPEELYQSLPRRPEDVIPTIMLCPYPQSQSCWANSDIEEEMKQCQDIIK SIRSLRATYTIPASKKLHTYLHVKNQENLERFTKNSSFIRVLAYASELEVSISDESRPGC IVNVVNENVSTLLDVRGSVDFNLEIARLETKKQQLVKNYETLVSKTTIPSYDKVPQNIRD DNTQKIKALDEEINITNKTIESFTKLNInyksliiiiikflln* Frame B: wpmdkrhkyiinnvrtktnstnqrdgnkkerekesqrgresreisknerkgsts sskrkritktkrtrekrkrsrkrktrsrkncrtyknfknpkgkercfkfiiii ssnssinlvllvrwifftretngdsttcsrkvcncysttkcyrftfrtcinqfn srcscslssyegslfmgtryrscrycntssc--- ---lhpihaixpprscinhyhvvqkmsfqplcyvhthnlnhvgpiltlrkknnvkissn qfvhfvlpipfqplknftliftlkikrisnvslktlhsfvflmplnskfplvmnlvlvv slmlsmkmfqpfmledllisilkllvskqrnnnwsktmklfqklpyllmikfhkisem iilkklklmkklilqtkplkvlqnifkiinhn*****sfnyis Frame C: glwiekdini*IMSEPKPTQPIKEIDEETKRKNEEKKKAKEAEKAEKLAKMKEKEAKQA AAKEKELQNKLKKEQEKKEKEAEEKEKQEAEEKIVREHIEKILKTPKGEKKDVSSLLSSY HPTAVESIWYDYWLDNGYFSPEKQMEIQPHVVKDKKFVIVIPPPNVTGSLHLGHALTNSI QDAVVRYHRMKGEVCLWVPGTDHAGIATQVVV--- ---yipfmpyxprgvvsiittssrrchsnhyvmsiptisimlgqfhgrnetmsryhqi nsftscylyhsslktshlssrksresrtfhklfihscfslcltrsfh*isswly rccqkcfnpfrcricfqsncssrnkettigqklnfsfknyhtflsstkyqr ysknsfrrnyykqnhkfykikylkliiinnnnnkvlitklv
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHP511 (CHP511Q) /CSM/CH/CHP5-A/CHP511Q.Seq.d/ 1788 0.0 VHP692 (VHP692Q) /CSM/VH/VHP6-D/VHP692Q.Seq.d/ 1148 0.0 VHN702 (VHN702Q) /CSM/VH/VHN7-A/VHN702Q.Seq.d/ 1148 0.0 VHJ111 (VHJ111Q) /CSM/VH/VHJ1-A/VHJ111Q.Seq.d/ 1148 0.0 VHA717 (VHA717Q) /CSM/VH/VHA7-A/VHA717Q.Seq.d/ 1148 0.0 SHD476 (SHD476Q) /CSM/SH/SHD4-D/SHD476Q.Seq.d/ 1148 0.0 AHC525 (AHC525Q) /CSM/AH/AHC5-B/AHC525Q.Seq.d/ 1140 0.0 SHF791 (SHF791Q) /CSM/SH/SHF7-D/SHF791Q.Seq.d/ 1136 0.0 VHM840 (VHM840Q) /CSM/VH/VHM8-B/VHM840Q.Seq.d/ 1132 0.0 VHL788 (VHL788Q) /CSM/VH/VHL7-D/VHL788Q.Seq.d/ 1132 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC115612\|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 1138 0.0 8 AB092433\|AB092433.1 Entamoeba histolytica mRNA for valyl tRNA synthetase, partial cds. 96 1e-25 2 BH161129\|BH161129.1 ENTSE35TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 84 3e-22 2 BH159895\|BH159895.1 ENTRU27TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 72 1e-18 2 AZ550882\|AZ550882.1 ENTEC77TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 84 4e-14 3 AZ551677\|AZ551677.1 ENTDS20TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 84 8e-12 1 DT618861\| ENSANGP00000010240 [Anopheles gambiae str. PEST], mRNA sequence. 52 2e-07 2 CV464811\|CV464811.1 taj26d03.y1 Hydra EST UCI 5 ALP Hydra magnipapillata cDNA 5' similar to SW:SYV_FUGRU P49696 VALYL-TRNA SYNTHETASE ;, mRNA sequence. 52 2e-07 2 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 40 4e-06 15 DD122063\|DD122063.1 STAPHYLOCOCCUS AUREUS PROTEINS AND NUCLEIC ACIDS. 58 4e-05 2
dna update	2005.10. 3
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q86KU2) RecName: Full=Probable valyl-tRNA synthetase, cytoplasm... 386 e-106 AB092433_1(AB092433\|pid:none) Entamoeba histolytica mRNA for val... 139 2e-31 AE013599_1725(AE013599\|pid:none) Drosophila melanogaster chromos... 137 1e-30 CR954203_287(CR954203\|pid:none) Ostreococcus tauri strain OTTH05... 135 4e-30 EU282356_1(EU282356\|pid:none) Sus scrofa valyl-tRNA synthetase (... 131 6e-29 (P26640) RecName: Full=Valyl-tRNA synthetase; EC=6.1.1.... 130 8e-29 BC012808_1(BC012808\|pid:none) Homo sapiens valyl-tRNA synthetase... 130 8e-29 AF087141_1(AF087141\|pid:none) Mus musculus uncharacterized long ... 130 1e-28 AB008527_1(AB008527\|pid:none) Trichomonas vaginalis gene for Val... 130 1e-28 (Q04462) RecName: Full=Valyl-tRNA synthetase; EC=6.1.1.... 130 1e-28
protein update	2009. 4.11
PSORT	psg: 0.61 gvh: 0.07 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: plasma membrane >> prediction for CHP511 is nuc
5' end seq. ID	CHP511F
5' end seq.	>CHP511F.Seq TTGGCCTATGGATTGAAAAAGACATAAATATATAATAAATAATGTCAGAACCAAAACCAA CTCAACCAATCAAAGAGATTGATGAGGAAACTAAAAGAAAGAATGAAGAGAAAAAGAAAG CCAAAGAGGCAGAGAAAGCAGAGAAATTAGCAAAAATGAAAGAAAAGGAAGCTAAACAAG CAGCAGCAAAAGAAAAAGAATTACAAAATAAACTTAAAAAAGAACAAGAGAAAAAAGAAA AAGAAGCTGAAGAAAAAGAAAAACAAGAAGCTGAAGAAAAAATTGTTAGAGAACATATTG AAAAAATTTTAAAAACCCCAAAGGGTGAAAAGAAAGATGTTTCAAGTTTATTATCATCAT ATCATCCAACAGCAGTTGAATCAATTTGGTATGATTATTGGTTAGATAATGGATATTTTT CACCAGAGAAACAAATGGAGATTCAACCACATGTAGTTAAAGATAAAAAGTTTGTAATTG TTATTCCACCACCAAATGTTACAGGTAGTTTACATTTAGGACATGCATTAACCAATTCAA TTCAAGATGCAGTTGTTCGTTATCATCGTATGAAGGGTGAAGTTTGTTTATGGGTACCAG GTACAGATCATGCAGGTATTGCAACACAAGTAGTTGTANNNNNNNNNN
Length of 5' end seq.	648
3' end seq. ID	CHP511Z
3' end seq.	>CHP511Z.Seq NNNNNNNNNNATTACATCCCATTCATGCCATACNTCCCCCGAGGAGTTGTATCAATCATT ACCACGTCGTCCAGAAGATGTCATTCCAACCATTATGTTATGTCCATACCCACAATCTCA ATCATGTTGGGCCAATTCTGACATTGAGGAAGAAATGAAACAATGTCAAGATATCATCAA ATCAATTCGTTCACTTCGTGCTACCTATACCATTCCAGCCTCTAAAAAACTTCACACTTA TCTTCACGTTAAAAATCAAGAGAATCTCGAACGTTTCACTAAAAACTCTTCATTCATTCG TGTTTTAGCTTATGCCTCTGAACTCGAAGTTTCCATTAGTGATGAATCTCGTCCTGGTTG TATCGTTAATGTTGTCAATGAAAATGTTTCAACCCTTTTAGATGTTAGAGGATCTGTTGA TTTCAATCTTGAAATTGCTCGTCTCGAAACAAAGAAACAACAATTGGTCAAAAACTATGA AACTTTAGTTTCAAAAACTACCATACCTTCTTATGATAAAGTTCCACAAAATATCAGAGA TGATAATACTCAAAAAATTAAAGCTTTAGATGAAGAAATTAATATTACAAACAAAACCAT TGAAAGTTTTACAAAATTAAATATTTAAAATTATAAATCATAATTAATAATAATAATAAT AAAGTTTTAATTACTAAATTAGTAA
Length of 3' end seq.	685
Connected seq. ID	CHP511P
Connected seq.	>CHP511P.Seq TTGGCCTATGGATTGAAAAAGACATAAATATATAATAAATAATGTCAGAACCAAAACCAA CTCAACCAATCAAAGAGATTGATGAGGAAACTAAAAGAAAGAATGAAGAGAAAAAGAAAG CCAAAGAGGCAGAGAAAGCAGAGAAATTAGCAAAAATGAAAGAAAAGGAAGCTAAACAAG CAGCAGCAAAAGAAAAAGAATTACAAAATAAACTTAAAAAAGAACAAGAGAAAAAAGAAA AAGAAGCTGAAGAAAAAGAAAAACAAGAAGCTGAAGAAAAAATTGTTAGAGAACATATTG AAAAAATTTTAAAAACCCCAAAGGGTGAAAAGAAAGATGTTTCAAGTTTATTATCATCAT ATCATCCAACAGCAGTTGAATCAATTTGGTATGATTATTGGTTAGATAATGGATATTTTT CACCAGAGAAACAAATGGAGATTCAACCACATGTAGTTAAAGATAAAAAGTTTGTAATTG TTATTCCACCACCAAATGTTACAGGTAGTTTACATTTAGGACATGCATTAACCAATTCAA TTCAAGATGCAGTTGTTCGTTATCATCGTATGAAGGGTGAAGTTTGTTTATGGGTACCAG GTACAGATCATGCAGGTATTGCAACACAAGTAGTTGTA----------ATTACATCCCAT TCATGCCATACNTCCCCCGAGGAGTTGTATCAATCATTACCACGTCGTCCAGAAGATGTC ATTCCAACCATTATGTTATGTCCATACCCACAATCTCAATCATGTTGGGCCAATTCTGAC ATTGAGGAAGAAATGAAACAATGTCAAGATATCATCAAATCAATTCGTTCACTTCGTGCT ACCTATACCATTCCAGCCTCTAAAAAACTTCACACTTATCTTCACGTTAAAAATCAAGAG AATCTCGAACGTTTCACTAAAAACTCTTCATTCATTCGTGTTTTAGCTTATGCCTCTGAA CTCGAAGTTTCCATTAGTGATGAATCTCGTCCTGGTTGTATCGTTAATGTTGTCAATGAA AATGTTTCAACCCTTTTAGATGTTAGAGGATCTGTTGATTTCAATCTTGAAATTGCTCGT CTCGAAACAAAGAAACAACAATTGGTCAAAAACTATGAAACTTTAGTTTCAAAAACTACC ATACCTTCTTATGATAAAGTTCCACAAAATATCAGAGATGATAATACTCAAAAAATTAAA GCTTTAGATGAAGAAATTAATATTACAAACAAAACCATTGAAAGTTTTACAAAATTAAAT ATTTAAAATTATAAATCATAATTAATAATAATAATAATAAAGTTTTAATTACTAAATTAG TAA
Length of connected seq.	1313
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas