NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP487
Library CH
(Link to library)
Clone ID CHP487
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16328-1
Original site URL
Representative seq. ID CHP487P
(Link to Original site)
Representative DNA sequence 
>CHP487 (CHP487Q) /CSM/CH/CHP4-D/CHP487Q.Seq.d/
CTGTTGGCCTACTGGTATTTTGGAAGTATAAATAAAATTATTTTTAATAATAATTTCCTT
AGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTACCATTAATTATTATT
TTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGNGAAGAGGCATATTTTGAATATAGG
ATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGA
AGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAA
CCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTT
GAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAA
CTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTA
TATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAA
CAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCA
GAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATT
CATGAAAAACCAGTTTATGAAGGTGATATCAAACCAAGATTTATTACGTCGTAAAAATXX
XXXXXXXXAAGTTTACGAAGGGTGATATTAACCAAGANTTTCAGGTTCGTAAAAAATCAT
CAAGAGAAAACTGTTTATGAAGGGTGATATCCAAACAAGACTTATTACGTCGTAAAAATC
TTGGATAAACCNTGATTCAAAACAAGTATATCCCAGGTGATGTTATTCCAAGATATTTTA
CGTGTTATTAATCGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACAAGACTTATTA
CATCGTAATAACAAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACATTAAACAAGAT
TTATTACGTCGTAATAACAAAAATCATCAAGAAGAACAAGTATATCAAGGTGATATTATT
CAAGATATTTTACGTGTTTTAAATTATGAAGAGAAAGAAGTTTACGAAGGTGATATTAAA
CAAAATTTGTTGCGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTATGAAGGTGAT
ATTAAACAAGATTTATTACGTCGTAATAACAAAAACCATCAAGAGAAACTTGTTTATGAA
GGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATAAAGAAGAACAAGTA
TATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGAAAAAGAAGTA
AATGAGGATGAAATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCAAGAAGAAGAG
GCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAGTCAAGCATTT
GTTGAACAACATNCCAAACCAACACAACAATCAAAAAACAATTCACTTGTCAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgilev*iklfliiislvfk**ykk*infihyh*llf**frvvlflstxkrhilnig
fimknlfsnlvmilkfnmqeeyylvmk*v*qtl*vklltnq*niiligifiltqtqllfl
nlkqsfvtknssm*mdilinfvkviivifahgmvhllgnyileilnkiyyfvimkink*n
kymkvilnki*FVVKIKFIQKNKCMKRILNNKFFSVSKIFMKNQFMKVISNQDLLRRKN-
--

---SLRRVILTKXFRFVKNHQEKTVYEG*ypnktyyvvkildkp*fktsisqvmlfqdil
rvinrdekevyegdikqdllhrnnknrqekpvyegdikqdllrrnnknhqeeqvyqgdii
qdilrvlnyeekevyegdikqnllrrknhdhpekeiyegdikqdllrrnnknhqeklvye
gdikqdllrrnnknhkeeqvyqgdiiqdilrvlnhgekevnedeiekdlmqrknhhqeee
asedleeeigklwnkqsqafveqhxkptqqsknnslvk
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywyfgsinkiifnnnflsf*iii*kmnkfyslpliiiliiscgaffihgeeayfeyr
ihnekfifklsddikiqharrvlsgdeisltnvvgkiinkpieyninwdfhldpdsvtff
esetefcnqkfqyvngyidklcesdncyfcpwdgslvrelyfgdikqdlllrnnenqqvk
qvyegdikqdlirrknkihpekqmheedikqqvffriknihekpvyegdikprfits*k-
--

---kftkgdinqxfqvrkkssrencl*rviskqdllrrknlg*txiqnkyipgdvipryf
tcy*s**krsl*r*y*trlits**qkssretsi*r*h*trfits**qkssrrtsisr*yy
sryftcfkl*rerslrr*y*tkfvaskks*ssrkrnl*r*y*trfits**qkpsretcl*
r*h*trfits**qks*rrtsisr*yysryftcfkswrkrsk*g*n*krfdat*kspsrrr
gf*rlgrrnwktle*tkssic*ttxqtnttikkqftcq

Frame B:
cwptgilev*iklfliiislvfk**ykk*infihyh*llf**frvvlflstxkrhilnig
fimknlfsnlvmilkfnmqeeyylvmk*v*qtl*vklltnq*niiligifiltqtqllfl
nlkqsfvtknssm*mdilinfvkviivifahgmvhllgnyileilnkiyyfvimkink*n
kymkvilnki*FVVKIKFIQKNKCMKRILNNKFFSVSKIFMKNQFMKVISNQDLLRRKN-
--

---SLRRVILTKXFRFVKNHQEKTVYEG*ypnktyyvvkildkp*fktsisqvmlfqdil
rvinrdekevyegdikqdllhrnnknrqekpvyegdikqdllrrnnknhqeeqvyqgdii
qdilrvlnyeekevyegdikqnllrrknhdhpekeiyegdikqdllrrnnknhqeklvye
gdikqdllrrnnknhkeeqvyqgdiiqdilrvlnhgekevnedeiekdlmqrknhhqeee
asedleeeigklwnkqsqafveqhxkptqqsknnslvk

Frame C:
vgllvfwkyk*nyf***fp*flnnnikne*ilfitinyyfnnfvwcffyprxrgif*i*d
s**kiyfqt***y*nstckksiiw**nkfnkrcr*ny*qtnri*y*lgfss*prlsyff*
i*nrvl*pkipvckwiy**tl*k**llflpmgwftc*giifwry*trsits***kstskt
si*r*y*trfnss*k*nssrktna*rgy*ttsffpyqkys*ktsl*r*yqtkiyyvvk--
-

---vyeg*y*prxsgs*kiikrklfmkgdiqtrlits*kswinxdskqvypr*cyskify
vllivmkkkfmkvilnktyyivitkivkrnqymkvtlnkiyyvvitkiikknkyikvilf
kifyvf*imkrkkftkvilnkiccvekimiiqkkkfmkvilnkiyyvvitktikrnlfmk
vtlnkiyyvvitkiikknkyikvilfkifyvf*imekkk*mrmklkki*cnvkitikkkr
llktwkkklenfginkvkhllnnxpnqhnnqktihls
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP487 (CHP487Q) /CSM/CH/CHP4-D/CHP487Q.Seq.d/                       2623   0.0
AHH626 (AHH626Q) /CSM/AH/AHH6-B/AHH626Q.Seq.d/                       1469   0.0
AHL622 (AHL622Q) /CSM/AH/AHL6-A/AHL622Q.Seq.d/                       1467   0.0
CHR612 (CHR612Q) /CSM/CH/CHR6-A/CHR612Q.Seq.d/                       1463   0.0
CHI115 (CHI115Q) /CSM/CH/CHI1-A/CHI115Q.Seq.d/                       1463   0.0
CHF220 (CHF220Q) /CSM/CH/CHF2-A/CHF220Q.Seq.d/                       1459   0.0
CHI365 (CHI365Q) /CSM/CH/CHI3-C/CHI365Q.Seq.d/                       1453   0.0
CHI213 (CHI213Q) /CSM/CH/CHI2-A/CHI213Q.Seq.d/                       1453   0.0
SHK754 (SHK754Q) /CSM/SH/SHK7-C/SHK754Q.Seq.d/                       1451   0.0
CHR493 (CHR493Q) /CSM/CH/CHR4-D/CHR493Q.Seq.d/                       1447   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M29237|M29237.1 D.discoideum cyclic AMP-inducible protein gene, complete cds.   839   0.0    14
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        34   6e-10  32
AE017243|AE017243.1 Mycoplasma hyopneumoniae J, complete genome.    36   6e-07  34
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    30   6e-06  31
AE017244|AE017244.1 Mycoplasma hyopneumoniae 7448, complete genome.    36   1e-05  30
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   2e-05  30
CP000013|CP000013.1 Borrelia garinii PBi, complete genome.         36   3e-05  29
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32   3e-05  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   4e-05  29
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome.    38   4e-05  31
dna update 2005.10. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...    96   4e-18
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    84   1e-14
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    80   2e-13
(Q9MTL3) RecName: Full=Acetyl-coenzyme A carboxylase carboxyl tr...    62   5e-08
AL844506_118(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    60   2e-07
AF056936_1(AF056936|pid:none) Plasmodium falciparum mature paras...    56   4e-06
EU262889_31(EU262889|pid:none) Oenothera biennis chloroplast, co...    50   2e-04
AM910994_140(AM910994|pid:none) Plasmodium knowlesi strain H chr...    49   5e-04
CR548612_204(CR548612|pid:none) Paramecium tetraurelia macronucl...    49   6e-04
AM180355_2790(AM180355|pid:none) Clostridium difficile 630 compl...    48   8e-04
protein update 2009. 4.11
PSORT 

 psg: 0.51  gvh: 0.20  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHP487 is nuc
5' end seq. ID CHP487F
5' end seq. 
>CHP487F.Seq
CTGTTGGCCTACTGGTATTTTGGAAGTATAAATAAAATTATTTTTAATAATAATTTCCTT
AGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTACCATTAATTATTATT
TTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGNGAAGAGGCATATTTTGAATATAGG
ATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGA
AGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAA
CCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTT
GAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAA
CTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTA
TATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAA
CAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCA
GAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATT
CATGAAAAACCAGTTTATGAAGGTGATATCAAACCAAGATTTATTACGTCGTAAAAATNN
NNNNNNNN
Length of 5' end seq. 728
3' end seq. ID CHP487Z
3' end seq. 
>CHP487Z.Seq
NNNNNNNNNNAAGTTTACGAAGGGTGATATTAACCAAGANTTTCAGGTTCGTAAAAAATC
ATCAAGAGAAAACTGTTTATGAAGGGTGATATCCAAACAAGACTTATTACGTCGTAAAAA
TCTTGGATAAACCNTGATTCAAAACAAGTATATCCCAGGTGATGTTATTCCAAGATATTT
TACGTGTTATTAATCGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACAAGACTTAT
TACATCGTAATAACAAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACATTAAACAAG
ATTTATTACGTCGTAATAACAAAAATCATCAAGAAGAACAAGTATATCAAGGTGATATTA
TTCAAGATATTTTACGTGTTTTAAATTATGAAGAGAAAGAAGTTTACGAAGGTGATATTA
AACAAAATTTGTTGCGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTATGAAGGTG
ATATTAAACAAGATTTATTACGTCGTAATAACAAAAACCATCAAGAGAAACTTGTTTATG
AAGGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATAAAGAAGAACAAG
TATATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGAAAAAGAAG
TAAATGAGGATGAAATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCAAGAAGAAG
AGGCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAGTCAAGCAT
TTGTTGAACAACATNCCAAACCAACACAACAATCAAAAAACAATTCACTTGTCAAG
Length of 3' end seq. 836
Connected seq. ID CHP487P
Connected seq. 
>CHP487P.Seq
CTGTTGGCCTACTGGTATTTTGGAAGTATAAATAAAATTATTTTTAATAATAATTTCCTT
AGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTACCATTAATTATTATT
TTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGNGAAGAGGCATATTTTGAATATAGG
ATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAAATTCAACATGCAAGA
AGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGTAAAATTATTAACAAA
CCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGACTCAGTTACTTTTTTT
GAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAATGGATATATTGATAAA
CTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCACTTGTTAGGGAATTA
TATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAAAATCAACAAGTAAAA
CAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAAAATAAAATTCATCCA
GAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTCCGTATCAAAAATATT
CATGAAAAACCAGTTTATGAAGGTGATATCAAACCAAGATTTATTACGTCGTAAAAAT--
--------AAGTTTACGAAGGGTGATATTAACCAAGANTTTCAGGTTCGTAAAAAATCAT
CAAGAGAAAACTGTTTATGAAGGGTGATATCCAAACAAGACTTATTACGTCGTAAAAATC
TTGGATAAACCNTGATTCAAAACAAGTATATCCCAGGTGATGTTATTCCAAGATATTTTA
CGTGTTATTAATCGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACAAGACTTATTA
CATCGTAATAACAAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACATTAAACAAGAT
TTATTACGTCGTAATAACAAAAATCATCAAGAAGAACAAGTATATCAAGGTGATATTATT
CAAGATATTTTACGTGTTTTAAATTATGAAGAGAAAGAAGTTTACGAAGGTGATATTAAA
CAAAATTTGTTGCGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTATGAAGGTGAT
ATTAAACAAGATTTATTACGTCGTAATAACAAAAACCATCAAGAGAAACTTGTTTATGAA
GGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATAAAGAAGAACAAGTA
TATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGAAAAAGAAGTA
AATGAGGATGAAATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCAAGAAGAAGAG
GCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAGTCAAGCATTT
GTTGAACAACATNCCAAACCAACACAACAATCAAAAAACAATTCACTTGTCAAG
Length of connected seq. 1544
Full length Seq ID -
Full length Seq. -
Length of full length seq. -