CHP479
Library CH
(Link to library)
Clone ID CHP479
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHP479P
(Link to Original site)
Representative DNA sequence
>CHP479 (CHP479Q) /CSM/CH/CHP4-D/CHP479Q.Seq.d/
ACTGTTGGCCTACTGGGTTCTCCAATTTTTAAAAAAAAAGNAAAATAAAAAAAAAAATAA
TNTTTTATTAGTCATTATAAAATTGNGAATTATNTNCAAAACTTTCAAACAGATAGTTCA
NCCCTAATATTAGGTTTATTGATTAACCTAATAATACTTGTANCAATAATTAATNGGGTA
TATAATTNATTTTCTGGGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGNGGCGTCC
AAAACTTCAAAAAAAANAAXXXXXXXXXXGTTNTCCAATTTTTAAAAAAAAAAGAAAATA
AAAAAAAAAATAATATTTTATTAGTCATTATAAAATTGTGAATTATATACAAAACTTTCA
AACAGATAGTTCAGCCCTAATATTAGGTTTATTGATTAACCTAATAATACTTGTAGCAAT
AATTAATTGGGTATATAATTTATTT
sequence update 2002.10.25
Translated Amino Acid sequence
tvgllgspifkkkxk*kkk*XFISHYKIXNYXQNFQTDSSXLILGLLINLIILVXIINXV
YNXFSGHSSEHTKNELKXASKTSKKX---

---VXQFLKKKENKKKNNILLVIIKL*iiyktfkqivqp*y*vy*lt**yl*q*ligyii
y


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllgspifkkkxk*kkk*XFISHYKIXNYXQNFQTDSSXLILGLLINLIILVXIINXV
YNXFSGHSSEHTKNELKXASKTSKKX---

---VXQFLKKKENKKKNNILLVIIKL*iiyktfkqivqp*y*vy*lt**yl*q*ligyii
y

Frame B:
llaywvlqflkkkxnkkknnxllviiklxixxktfkqivxp*y*vy*lt**ylxq*lxgy
iixflgillnipkts*rxrpklqkkx---

---xsnf*kkkkikkkiify*sl*ncelytklsnr*fspnirfid*pnntcsnn*lgi*f
i

Frame C:
cwptgfsnf*kkxkikkkixfy*sl*nxelxxklsnr*fxpnirfid*pnntcxnn*xgi
*xifwaff*tyqkrvkggvqnfkkx---

---xpifkkkrk*kkk*yfishykivnyiqnfqtdssalilgllinliilvaiinwvynl
f

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/ 325 3e-88
SSM739 (SSM739Q) /CSM/SS/SSM7-B/SSM739Q.Seq.d/ 325 3e-88
FCL-AC03 (FCL-AC03Q) /CSM/FCL/FCL-AC/FCL-AC03Q.Seq.d/ 325 3e-88
CHP479 (CHP479Q) /CSM/CH/CHP4-D/CHP479Q.Seq.d/ 325 3e-88
CHN103 (CHN103Q) /CSM/CH/CHN1-A/CHN103Q.Seq.d/ 325 3e-88
CFC817 (CFC817Q) /CSM/CF/CFC8-A/CFC817Q.Seq.d/ 325 3e-88
AHA334 (AHA334Q) /CSM/AH/AHA3-B/AHA334Q.Seq.d/ 325 3e-88
CHI139 (CHI139Q) /CSM/CH/CHI1-B/CHI139Q.Seq.d/ 323 1e-87
CHD280 (CHD280Q) /CSM/CH/CHD2-D/CHD280Q.Seq.d/ 321 5e-87
CHQ627 (CHQ627Q) /CSM/CH/CHQ6-B/CHQ627Q.Seq.d/ 319 2e-86

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX255900|BX255900.5 Zebrafish DNA sequence from clone CH211-261C8 in linkage group 5. 42 0.079 3
BX537346|BX537346.18 Zebrafish DNA sequence from clone DKEYP-2A6 in linkage group 1. 36 0.11 5
BX510925|BX510925.7 Zebrafish DNA sequence from clone CH211-278B8 in linkage group 5. 36 0.13 5
CJ453835|CJ453835.1 Macaca fascicularis mRNA, clone: QflA-19550, 5' end, expressed in brain frontal lobe. 36 0.65 3
BM301961|BM301961.1 MCA049A08_23106 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCA049A08 5, mRNA sequence. 40 0.74 2
CJ491886|CJ491886.1 Macaca fascicularis mRNA, clone: QtsA-19841, 5' end, expressed in testis. 42 0.89 2
AC125741|AC125741.3 Rattus norvegicus clone CH230-20N24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 34 1.6 4
CJ455516|CJ455516.1 Macaca fascicularis mRNA, clone: QflA-21304, 5' end, expressed in brain frontal lobe. 32 2.2 3
AC165495|AC165495.1 Bos taurus clone CH240-172D20, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces. 44 2.3 1
AL445647|AL445647.6 Human DNA sequence from clone RP11-471M2 on chromosome 13 Contains an STS and GSSs. 44 2.3 1
dna update 2005.10. 1
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 358,063,617
protein update 2009. 4.11
PSORT

psg: 0.68 gvh: 0.57 alm: 0.15 top: 0.63 tms: 0.07 mit: 0.27 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.14 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
24.0 %: mitochondrial
24.0 %: cytoplasmic
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CHP479 is nuc

5' end seq. ID CHP479F
5' end seq.
>CHP479F.Seq
ACTGTTGGCCTACTGGGTTCTCCAATTTTTAAAAAAAAAGNAAAATAAAAAAAAAAATAA
TNTTTTATTAGTCATTATAAAATTGNGAATTATNTNCAAAACTTTCAAACAGATAGTTCA
NCCCTAATATTAGGTTTATTGATTAACCTAATAATACTTGTANCAATAATTAATNGGGTA
TATAATTNATTTTCTGGGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGNGGCGTCC
AAAACTTCAAAAAAAANAANNNNNNNNNN
Length of 5' end seq. 269
3' end seq. ID CHP479Z
3' end seq.
>CHP479Z.Seq
NNNNNNNNNNGTTNTCCAATTTTTAAAAAAAAAAGAAAATAAAAAAAAAAATAATATTTT
ATTAGTCATTATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTA
ATATTAGGTTTATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAAT
TTATTT
Length of 3' end seq. 186
Connected seq. ID CHP479P
Connected seq.
>CHP479P.Seq
ACTGTTGGCCTACTGGGTTCTCCAATTTTTAAAAAAAAAGNAAAATAAAAAAAAAAATAA
TNTTTTATTAGTCATTATAAAATTGNGAATTATNTNCAAAACTTTCAAACAGATAGTTCA
NCCCTAATATTAGGTTTATTGATTAACCTAATAATACTTGTANCAATAATTAATNGGGTA
TATAATTNATTTTCTGGGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGNGGCGTCC
AAAACTTCAAAAAAAANAA----------GTTNTCCAATTTTTAAAAAAAAAAGAAAATA
AAAAAAAAAATAATATTTTATTAGTCATTATAAAATTGTGAATTATATACAAAACTTTCA
AACAGATAGTTCAGCCCTAATATTAGGTTTATTGATTAACCTAATAATACTTGTAGCAAT
AATTAATTGGGTATATAATTTATTT
Length of connected seq. 435
Full length Seq ID -
Full length Seq. -
Length of full length seq. -