CHP463
Library CH
(Link to library)
Clone ID CHP463
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHP463P
(Link to Original site)
Representative DNA sequence
>CHP463 (CHP463Q) /CSM/CH/CHP4-C/CHP463Q.Seq.d/
ACTGTTGGCCTCTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGCCAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGXXXXXXXXX
XAAATCAACATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATG
CTAAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATAC
TTTATTGCTCAAATTTTCCAATTTAAATATGAATCAACAACTAGTTATAGTGAAAATAAG
TCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCA
TTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGA
AAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAA
ATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTC
TATGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACAT
ACTGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTA
AACCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTC
TTGTATCATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTT
AAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LLASGIDPQLVISKXMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPEPKITKIRCDDQV
ISILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGG
SVNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNA
SYQTGDIPNKPTIDDQ---

---INIHTYSSLTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQFKYESTTSYSE
NKSSGFPNEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVDNLRLKLREKHA
AEIAKHYSFGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfpnsnpiisnskl
nlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkannysiif
k


Translated Amino Acid sequence (All Frames)
Frame A:
tvglwx*paisn**xneiktfnyffiyfyl*vfic*igllsnkq*kagaknnqnpm**ss
yfhsfksk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrr
ir*fhi*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*c
fisnwrytk*tnnr*pr---

---kstftlilv*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsnlnmnqqlviv
kishqdfqmkcisvllql*yf*h*fslllkhrlknilkreepekhldqliiyvlnfvrnm
llkslniihlvmkalqnqikvismi*ernyldshsldvvsknilikyyfqiqiq*ypiln
*t*tkftnl*snnqfiscncfcsciisssisiynfflllliylkqink*ikkkqiitqlf
l

Frame B:
LLASGIDPQLVISKXMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPEPKITKIRCDDQV
ISILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGG
SVNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNA
SYQTGDIPNKPTIDDQ---

---nqhshlf*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi*i*inn*l**
k*virisk*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**sts*ts*etc
c*nr*tlfiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntiskfksnniqf*i
kpkpnspiynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*llnyf
*

Frame C:
cwplxltrn**lvkx*n*ni*lffylflfigfyllnrivi**tmkgrsqk*pksdvmikl
fpff*iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*ed
plishitilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fiml
hikleiyqinqqsmtk---

---INIHTYSSLTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQFKYESTTSYSE
NKSSGFPNEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVDNLRLKLREKHA
AEIAKHYSFGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfpnsnpiisnskl
nlnqihqsiik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkannysiif
k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP463 (CHP463Q) /CSM/CH/CHP4-C/CHP463Q.Seq.d/ 2190 0.0
SHL812 (SHL812Q) /CSM/SH/SHL8-A/SHL812Q.Seq.d/ 1255 0.0
SHL593 (SHL593Q) /CSM/SH/SHL5-D/SHL593Q.Seq.d/ 1255 0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/ 1255 0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/ 1255 0.0
SHK774 (SHK774Q) /CSM/SH/SHK7-D/SHK774Q.Seq.d/ 1255 0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/ 1255 0.0
SHK629 (SHK629Q) /CSM/SH/SHK6-B/SHK629Q.Seq.d/ 1255 0.0
SHJ615 (SHJ615Q) /CSM/SH/SHJ6-A/SHJ615Q.Seq.d/ 1255 0.0
SHG893 (SHG893Q) /CSM/SH/SHG8-D/SHG893Q.Seq.d/ 1255 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 216 3e-89 21
CR925677|CR925677.1 Ehrlichia ruminantium str. Gardel, complete genome. 36 5e-07 29
AJ235271|AJ235271.1 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4. 36 2e-06 15
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5. 34 3e-05 17
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 4e-05 20
CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome. 34 7e-05 34
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 38 7e-05 28
CR548612|CR548612.1 Paramecium tetraurelia macronuclear largest chromosome, complete sequence. 36 1e-04 26
CR940347|CR940347.1 Theileria annulata genomic DNA chromosome 1 part 1. 34 2e-04 36
AX344569|AX344569.1 Sequence 20 from Patent WO0200932. 32 2e-04 18
dna update 2005.10. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX... 346 9e-94
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS... 346 1e-93
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS... 346 1e-93
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS... 346 1e-93
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS... 252 2e-65
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS... 252 2e-65
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS... 252 2e-65
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS... 252 2e-65
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS... 251 5e-65
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS... 249 9e-65
protein update 2009. 4.11
PSORT

psg: 0.75 gvh: 0.49 alm: 0.08 top: 0.37 tms: 0.13 mit: 0.25 mip: 0.06
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: nuclear
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHP463 is end

5' end seq. ID CHP463F
5' end seq.
>CHP463F.Seq
ACTGTTGGCCTCTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGCCAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGNNNNNNNNN
N
Length of 5' end seq. 601
3' end seq. ID CHP463Z
3' end seq.
>CHP463Z.Seq
NNNNNNNNNNAAATCAACATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAACTAT
GATGAAATGCTAAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGAT
GGTCAATACTTTATTGCTCAAATTTTCCAATTTAAATATGAATCAACAACTAGTTATAGT
GAAAATAAGTCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATA
TTTTTAGCATTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGA
AGAGCCAGAAAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACAT
GCTGCTGAAATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAA
AGTTATTTCTATGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTC
AAAGAACATACTGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAA
TTAAACCTAAACCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTG
TTTTTGTTCTTGTATCATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCT
AATATATTTAAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATT
TTTAAA
Length of 3' end seq. 726
Connected seq. ID CHP463P
Connected seq.
>CHP463P.Seq
ACTGTTGGCCTCTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAACA
TTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTTA
TCTAATAAACAATGAAAGGCCGGAGCCAAAAATAACCAAAATCCGATGTGATGATCAAGT
TATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTGA
TGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATAC
CTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGG
ATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTT
GAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGAG
AATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGC
TTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGG---------
-AAATCAACATTCACACTTATTCTAGTTTAACCTGTAATGTAACCAACTATGATGAAATG
CTAAAATATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATAC
TTTATTGCTCAAATTTTCCAATTTAAATATGAATCAACAACTAGTTATAGTGAAAATAAG
TCATCAGGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCA
TTAATTTTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGA
AAAGCATTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAA
ATCGCTAAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTC
TATGATTTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACAT
ACTGATTAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTA
AACCAAATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTC
TTGTATCATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTT
AAAACAAATAAATAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTAAA
Length of connected seq. 1307
Full length Seq ID -
Full length Seq. -
Length of full length seq. -