>CHP460 (CHP460Q) /CSM/CH/CHP4-C/CHP460Q.Seq.d/
XXXXXXXXXXTTGGTTTTGGGTTCTGCAAATTGTGACGAATCATTACGTGGTTATATGAC
AAAATATGATTGTTCATCCGCTGATATCAATCCAATTGGTGGTATGTCAAAAATTGATTT
ACGTTCATTCATTGAGTGGGCTGGTAAATTCAGAGATATGAAATCAATTCTNTCTGTACT
CACAGCAACACCAACCGCTGAATTAGAACCAATCACTGAAAACTATACACAATCCGATGA
AATTGATATGGGTATGACCTATGAAGAATTATCAATATTTGGTAAATTAAGAAAAGTCAA
TCGTTGTGGTCCAGTTTCAATGTTTGAACGTTTGGTTGCAGATTGGGCACATTTAGAACC
ATCAGTTGTGGCTGAAAAAGTTAAACGTTTCTTTTATTATTATGCAATCAATCGTCATAA
ATTAACAACTTTAACACCATCCTATCATGCTGAAGGTTATTCTCCTGATGATAATCGTTA
TGATCATCGTCAATTCCTTTACAATTCAAAATGGGATGTTCAATTTGAAACTATTGATAA
AATTGTATTAAGATTATTCTCAAAGACCA

---VLGSANCDESLRGYMTKYDCSSADINPIGGMSKIDLRSFIEWAGKFRDMKSILSVLT
ATPTAELEPITENYTQSDEIDMGMTYEELSIFGKLRKVNRCGPVSMFERLVADWAHLEPS
VVAEKVKRFFYYYAINRHKLTTLTPSYHAEGYSPDDNRYDHRQFLYNSKWDVQFETIDKI
VLRLFSKT

Frame A:
---wfwvlqivtnhyvvi*qnmivhplisiqlvvcqkliyvhslsglvnsei*nqfxlys
qqhqpln*nqslktihnpmkliwv*pmknyqylvn*eksivvvqfqclnvwlqighi*nh
qlwlkklnvsfiimqsivin*ql*hhpimlkvillmiivmiivnsftiqngmfnlkllik
ly*dysqrp


Frame B:
---gfgfckl*riitwlydki*lfir*yqsnwwyvkn*ftfih*vgw*iqryeinsxcth
sntnr*irtnh*klytir*n*ygydl*riiniw*ikksqslwssfnv*tfgcrlgtfrti
scg*ks*tfllllcnqss*innfntilsc*rlfs***sl*sssiplqfkmgcsi*ny**n
cikiilkd


Frame C:
---VLGSANCDESLRGYMTKYDCSSADINPIGGMSKIDLRSFIEWAGKFRDMKSILSVLT
ATPTAELEPITENYTQSDEIDMGMTYEELSIFGKLRKVNRCGPVSMFERLVADWAHLEPS
VVAEKVKRFFYYYAINRHKLTTLTPSYHAEGYSPDDNRYDHRQFLYNSKWDVQFETIDKI
VLRLFSKT

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP460 (CHP460Q) /CSM/CH/CHP4-C/CHP460Q.Seq.d/                       1102   0.0
CHP522 (CHP522Q) /CSM/CH/CHP5-A/CHP522Q.Seq.d/                       1096   0.0
VHC625 (VHC625Q) /CSM/VH/VHC6-B/VHC625Q.Seq.d/                       1086   0.0
VHA707 (VHA707Q) /CSM/VH/VHA7-A/VHA707Q.Seq.d/                       1086   0.0
CHS208 (CHS208Q) /CSM/CH/CHS2-A/CHS208Q.Seq.d/                       1086   0.0
CHR356 (CHR356Q) /CSM/CH/CHR3-C/CHR356Q.Seq.d/                       1086   0.0
CHQ803 (CHQ803Q) /CSM/CH/CHQ8-A/CHQ803Q.Seq.d/                       1086   0.0
CHQ189 (CHQ189Q) /CSM/CH/CHQ1-D/CHQ189Q.Seq.d/                       1086   0.0
CHP772 (CHP772Q) /CSM/CH/CHP7-C/CHP772Q.Seq.d/                       1086   0.0
CHP486 (CHP486Q) /CSM/CH/CHP4-D/CHP486Q.Seq.d/                       1086   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX489232|AX489232.1 Sequence 6532 from Patent WO02053728.          92   2e-19  2
AR545706|AR545706.1 Sequence 837 from patent US 6747137.           92   2e-19  2
BZ294214|BZ294214.1 CG0770.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG0770, DNA sequence.    52   4e-12  3
AL392865|AL392865.1 T7 end of clone AR0AA007D04 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    54   4e-09  2
CR380956|CR380956.1 Candida glabrata strain CBS138 chromosome J complete sequence.    52   7e-08  15
U10556|U10556.1 Saccharomyces cerevisiae chromosome VIII cosmid 9205.    52   7e-08  4
CR382124|CR382124.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL  Y-1140 of Kluyveromyces lactis.    52   2e-07  2
AL437572|AL437572.1 T3 end of clone BC0AA010B06 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    52   3e-06  2
CX520743|CX520743.1 s13dNF62E03VI019_449272 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence.    38   7e-05  3
CB395141|CB395141.1 OSTR149E3_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    54   8e-05  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008213_307(AP008213|pid:none) Oryza sativa (japonica cultivar-...   249   3e-65
CR382124_545(CR382124|pid:none) Kluyveromyces lactis strain NRRL...   244   9e-64
AE016820_727(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...   242   4e-63
CP000589_178(CP000589|pid:none) Ostreococcus lucimarinus CCE9901...   242   4e-63
CR380956_461(CR380956|pid:none) Candida glabrata strain CBS138 c...   242   6e-63
CP001324_574(CP001324|pid:none) Micromonas sp. RCC299 chromosome...   241   9e-63
CU640366_315(CU640366|pid:none) Podospora anserina genomic DNA c...   237   1e-61
FM992689_140(FM992689|pid:none) Candida dubliniensis CD36 chromo...   236   4e-61
CR382127_632(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...   235   5e-61
CP000496_147(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   235   5e-61

 psg: 0.75  gvh: 0.38  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for CHP460 is nuc

>CHP460Z.Seq
NNNNNNNNNNTTGGTTTTGGGTTCTGCAAATTGTGACGAATCATTACGTGGTTATATGAC
AAAATATGATTGTTCATCCGCTGATATCAATCCAATTGGTGGTATGTCAAAAATTGATTT
ACGTTCATTCATTGAGTGGGCTGGTAAATTCAGAGATATGAAATCAATTCTNTCTGTACT
CACAGCAACACCAACCGCTGAATTAGAACCAATCACTGAAAACTATACACAATCCGATGA
AATTGATATGGGTATGACCTATGAAGAATTATCAATATTTGGTAAATTAAGAAAAGTCAA
TCGTTGTGGTCCAGTTTCAATGTTTGAACGTTTGGTTGCAGATTGGGCACATTTAGAACC
ATCAGTTGTGGCTGAAAAAGTTAAACGTTTCTTTTATTATTATGCAATCAATCGTCATAA
ATTAACAACTTTAACACCATCCTATCATGCTGAAGGTTATTCTCCTGATGATAATCGTTA
TGATCATCGTCAATTCCTTTACAATTCAAAATGGGATGTTCAATTTGAAACTATTGATAA
AATTGTATTAAGATTATTCTCAAAGACCA