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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP430
Library CH
(Link to library)
Clone ID CHP430
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15680-1
Original site URL
Representative seq. ID CHP430P
(Link to Original site)
Representative DNA sequence 
>CHP430 (CHP430Q) /CSM/CH/CHP4-B/CHP430Q.Seq.d/
CTGTTGGCCTACTGGNATTTTTATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTG
TAAATATAATGATCATAAATATTTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAA
TGTTGTACCAATTAAATATGATTTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAA
AGGTGAAGAGACCATCACAGTTCAAGTAAAACAACCAACAAAAACCATAACTATACATTC
AATTGAAATTGAAATTCAATCAGCTTCAATAAAATCATCATCATCATCTCAATCATCAAA
ATCAATTACATTTTATGAACCAGAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATC
AGTTGGTGAATATTGTTTATCATTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGG
TTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATT
CGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGT
TTTCAATATCACTTTAACTGTCTCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAA
ATCAATTACTCCAAATAATGATGGTACTAAAACTTATATATTXXXXXXXXXXTGNAAGAA
ATGATCCGTAAATTGTTGAAACCATTATCACAACGTTTAGGCTTTGAAGTTAAATCAGGT
GAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTGGGT
GACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAATCT
TCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCCGAA
GCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAATCA
AGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTGGAA
TTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGGAAAT
GAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAAACC
TTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATGACT
GATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCTGAT
CGTTCAATTAAACAAAATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCATTT
AATAAAGATTTATTAAATTGGATTAAAAAATAAATATNCTAATTTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgifi*ff*LIIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFK
GEETITVQVKQPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELS
VGEYCLSLVFTGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAV
FNITLTVSECHTAISNMEEKSITPNNDGTKTYI---

---XEMIRKLLKPLSQRLGFEVKSGESSSDTLLRNKVNSYLGILGDKEIVAEARKRFEQF
KVDQSSLPSDIRSSVLVTVVKNGSEAEQQEIINRYLASNDIAEKSSLLSVVCKSPSSALV
LKALEFSVSKDVRTCESYMLWRVGNEFKPVVWKYFTENFKSINETFNQNVLFAYMISFAL
SSKMTDQQLQQVEDFFKQNPVAIADRSIKQNLEQIRNNTKWFNSFNKDLLNWIKK*ix*f
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxfyliflinhsqqnv*i**s*ifsrkgr*igitrkcctn*i*ftfktkfkriyf*
r*rdhhssskttnknhnytfn*n*nsisfnkiiiiisiikinyil*trrschl*i*k*ii
sw*ilfiigiywfik*qikrflsfkvyc*r*rslfsnnsirshrcssffsmf**tss*ss
fqyhfncl*msyryfkygrkinysk**wy*nlyi---

---xkk*svnc*nhyhnv*alklnqvnhpltlc*eik*tliwvfwvtkrlwprlerdlsn
skstnllylpisvqvf*sll*rmvpklnnkklsidtslpmilqrnqvycqlfanhhpvhw
y*rlwnslsqkmlelvnpicfgesemnlnq*fgnislktlnqsmkplikmfysli*slll
cpqk*linnynklkissnkiqlqllivqlnki*nkleiiqnglihlikiy*iglknkyxn
l

Frame B:
cwptgifi*ff*LIIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFK
GEETITVQVKQPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELS
VGEYCLSLVFTGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAV
FNITLTVSECHTAISNMEEKSITPNNDGTKTYI---

---xrndp*ivetiittfrl*s*ir*iil*hfvkk*skllfgyfg*qrdcgrg*kei*ai
qsrpifftfrypfkcfshcckewfrs*ttrnyq*iprfq*ycreikfivsclqitiqcig
iegfgilclkrc*nl*ilyalesrk*i*tssleifh*kl*inq*nl*skcfirlydlfcf
vlknd*stitts*rflqtksscnc*sfn*tkfrtn*k*ykmv*fi**rfikld*kinxli
*

Frame C:
vgllxflfnffn*s*stkcvnimiini**kr*idwyyqkmlyqlnmiyi*nqi*knlllk
vkrpsqfk*nnqqkp*lyiqlklkfnqlq*nhhhhlnhqnqlhfmnqkklsslnlkmnyq
lvnivyhwyllvy*mtn*kvsivqsillkvkivi*qqlnskppmlvvlfhvlmnqlikqf
sisl*lslnviplfqiwkknqllqimmvlkliy---

---XEMIRKLLKPLSQRLGFEVKSGESSSDTLLRNKVNSYLGILGDKEIVAEARKRFEQF
KVDQSSLPSDIRSSVLVTVVKNGSEAEQQEIINRYLASNDIAEKSSLLSVVCKSPSSALV
LKALEFSVSKDVRTCESYMLWRVGNEFKPVVWKYFTENFKSINETFNQNVLFAYMISFAL
SSKMTDQQLQQVEDFFKQNPVAIADRSIKQNLEQIRNNTKWFNSFNKDLLNWIKK*ix*f
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP430 (CHP430Q) /CSM/CH/CHP4-B/CHP430Q.Seq.d/                       2036   0.0
VHJ465 (VHJ465Q) /CSM/VH/VHJ4-C/VHJ465Q.Seq.d/                       1390   0.0
SHD772 (SHD772Q) /CSM/SH/SHD7-C/SHD772Q.Seq.d/                       1390   0.0
AHE447 (AHE447Q) /CSM/AH/AHE4-B/AHE447Q.Seq.d/                       1390   0.0
AHE251 (AHE251Q) /CSM/AH/AHE2-C/AHE251Q.Seq.d/                       1390   0.0
AHC169 (AHC169Q) /CSM/AH/AHC1-C/AHC169Q.Seq.d/                       1390   0.0
AHB669 (AHB669Q) /CSM/AH/AHB6-C/AHB669Q.Seq.d/                       1390   0.0
AHA737 (AHA737Q) /CSM/AH/AHA7-B/AHA737Q.Seq.d/                       1390   0.0
AHA172 (AHA172Q) /CSM/AH/AHA1-C/AHA172Q.Seq.d/                       1390   0.0
AHB725 (AHB725Q) /CSM/AH/AHB7-B/AHB725Q.Seq.d/                       1384   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY631393|AY631393.1 Dictyostelium discoideum puromycin-sensitive aminopeptidase-like protein (psa) mRNA, partial cds.  1057   0.0    2
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   5e-11  31
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   7e-09  19
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   3e-08  24
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    34   5e-07  32
CP000025|CP000025.1 Campylobacter jejuni RM1221, complete genome.    42   1e-06  36
CP000046|CP000046.1 Staphylococcus aureus subsp. aureus COL, complete genome.    34   3e-06  34
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32   6e-06  20
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   2e-05  20
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        34   2e-05  28
dna update 2005. 9.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   443   e-123
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   136   2e-30
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...   136   2e-30
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   136   2e-30
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   135   3e-30
FM992688_411(FM992688|pid:none) Candida dubliniensis CD36 chromo...   129   2e-28
(P55786) RecName: Full=Puromycin-sensitive aminopeptidase;      ...   128   4e-28
BC098978_1(BC098978|pid:none) Xenopus laevis hypothetical protei...   127   1e-27
A65888_1(A65888|pid:none) Sequence 1 from Patent WO9738114.  &Y0...   126   2e-27
AJ851657_1(AJ851657|pid:none) Gallus gallus mRNA for hypothetica...   126   2e-27
protein update 2009. 4.10
PSORT 

 psg: 0.53  gvh: 0.26  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHP430 is cyt
5' end seq. ID CHP430F
5' end seq. 
>CHP430F.Seq
CTGTTGGCCTACTGGNATTTTTATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTG
TAAATATAATGATCATAAATATTTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAA
TGTTGTACCAATTAAATATGATTTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAA
AGGTGAAGAGACCATCACAGTTCAAGTAAAACAACCAACAAAAACCATAACTATACATTC
AATTGAAATTGAAATTCAATCAGCTTCAATAAAATCATCATCATCATCTCAATCATCAAA
ATCAATTACATTTTATGAACCAGAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATC
AGTTGGTGAATATTGTTTATCATTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGG
TTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATT
CGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGT
TTTCAATATCACTTTAACTGTCTCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAA
ATCAATTACTCCAAATAATGATGGTACTAAAACTTATATATTNNNNNNNNNN
Length of 5' end seq. 652
3' end seq. ID CHP430Z
3' end seq. 
>CHP430Z.Seq
NNNNNNNNNNTGNAAGAAATGATCCGTAAATTGTTGAAACCATTATCACAACGTTTAGGC
TTTGAAGTTAAATCAGGTGAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCT
TATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAA
TTCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTT
GTAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAAT
GATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTG
GTATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATG
CTTTGGAGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTT
AAATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCT
TTGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAAT
CCAGTTGCAATTGCTGATCGTTCAATTAAACAAAATTTAGAACAAATTAGAAATAATACA
AAATGGTTTAATTCATTTAATAAAGATTTATTAAATTGGATTAAAAAATAAATATNCTAA
TTTAA
Length of 3' end seq. 725
Connected seq. ID CHP430P
Connected seq. 
>CHP430P.Seq
CTGTTGGCCTACTGGNATTTTTATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTG
TAAATATAATGATCATAAATATTTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAA
TGTTGTACCAATTAAATATGATTTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAA
AGGTGAAGAGACCATCACAGTTCAAGTAAAACAACCAACAAAAACCATAACTATACATTC
AATTGAAATTGAAATTCAATCAGCTTCAATAAAATCATCATCATCATCTCAATCATCAAA
ATCAATTACATTTTATGAACCAGAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATC
AGTTGGTGAATATTGTTTATCATTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGG
TTTCTATCGTTCAAAGTATACTGTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATT
CGAAGCCACCGATGCTCGTCGTTCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGT
TTTCAATATCACTTTAACTGTCTCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAA
ATCAATTACTCCAAATAATGATGGTACTAAAACTTATATATT----------TGNAAGAA
ATGATCCGTAAATTGTTGAAACCATTATCACAACGTTTAGGCTTTGAAGTTAAATCAGGT
GAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTGGGT
GACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAATCT
TCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCCGAA
GCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAATCA
AGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTGGAA
TTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGGAAAT
GAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAAACC
TTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATGACT
GATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCTGAT
CGTTCAATTAAACAAAATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCATTT
AATAAAGATTTATTAAATTGGATTAAAAAATAAATATNCTAATTTAA
Length of connected seq. 1357
Full length Seq ID -
Full length Seq. -
Length of full length seq. -