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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP426
Library CH
(Link to library)
Clone ID CHP426
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13114-1|Contig-U16361-1
Original site URL
Representative seq. ID CHP426P
(Link to Original site)
Representative DNA sequence 
>CHP426 (CHP426Q) /CSM/CH/CHP4-B/CHP426Q.Seq.d/
ACTGTTGGCCTACTGGNATTATTTAATTTTATAAATAATTAAACAACAACAACAACAACA
ACAACAACAAAAACAACAACAACAGTTTTTACTTTATATTTTTTATTGTTGTAATAAGAA
AATAAAACTATAAATTAAATATATTTGTAATACCATATCCATATAAAATTAATAATATTT
AGGATTTTTCTTTTTTTAATTATAATAATAAAAAAAAATCAACTTACTATAGTTTAATAT
CCTTTTTTTATTTAAATATAATAATAATAATAATACAAATATATATAAATTCAATTTCTT
GTCATAAAAAATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAA
TATAAATAGTAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGG
TGAAGATGATGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGA
AGGTATGGATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACA
AAAGAAACAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGG
CGGTCXXXXXXXXXXTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAAT
ATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGG
TAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATA
TTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTA
GTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTT
GTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTG
GTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAA
ATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGA
GTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTG
GTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAA
GTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTNCTTG
GTACTTGGTTTNCTTGGTATTANNNTTGTTG
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxylil*iikqqqqqqqqqkqqqqfllyifyccnkkikl*ikyicntisi*n**yl
gffff*l***kkinll*fnilflfkynnnnntniykfnfls*KIMDRNEGGDFPINTPNN
INSSGGSYNNSMNNSSNNIGEDDGGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQ
KKQFPKEMNSPSSEYGTTSGG---

---VGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEATDLWRAEQTFFGFAGTYISS
WREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVNENDNAQESSGKH
KAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVLRFNCFQNDMWLLVVVAGFS
FSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLXLGTWFXWYXXC
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxlfnfinn*tttttttttkttttvftlyflll**enktin*iyl*yhihikliif
riflfliiiikknqltiv*ypffi*i*****ykyi*iqflviknng*k*rg*fpnkhp**
yk**wg*l***ye*****yw*r*ww*w*rw*ynrrftn**ryg*ftiifklswrqr***t
ketvpkgnefsiigiwhnkwr---

---ssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*kllifgelnklslvllvlifh
hgekvplqslnflklerlvvis*pcgigreis*rnq*fvkfsvklnwsmkmimlknqvvn
irlnnlsvlqtknliplkiqdfsfqilssllliswl**vlyldlivskmicgfwls*lvs
lslpygiyglsfqwlfvkvknnghmllhtmltilfyxlvlgxlgixxv

Frame B:
llaywxylil*iikqqqqqqqqqkqqqqfllyifyccnkkikl*ikyicntisi*n**yl
gffff*l***kkinll*fnilflfkynnnnntniykfnfls*KIMDRNEGGDFPINTPNN
INSSGGSYNNSMNNSSNNIGEDDGGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQ
KKQFPKEMNSPSSEYGTTSGG---

---rrydscngvtkshsiyds*sqetl*sr*ewsitlgrsy*sles*tnflwfcwylyfi
merrfrfnr*ts*s*kd*ss*vshveleerfrketssl*sfpsn*igq*k**csrikw*t
*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydecct*i*lfpk*yvafgcrswfl
flylmafmvfhsngsssk*ktmaicffipcsqycfixwylvxlvlxll

Frame C:
cwptgii*fyk*lnnnnnnnnnknnnnsfyfiffivvirk*nyklnifvipypykinni*
dfsffnynnkkkstyyslisffylniiiiiiqiyinsischkk*wiemkgvisq*tplii
*ivvgvviiiv*iivviilvkmmvvvvtmvi*pkvyqlvkvwmiyhhlqtlvaaavmmnk
rnssqrk*ilhhrnmaqqvav---

---VGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEATDLWRAEQTFFGFAGTYISS
WREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVNENDNAQESSGKH
KAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVLRFNCFQNDMWLLVVVAGFS
FSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLXLGTWFXWYXXC
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP426 (CHP426Q) /CSM/CH/CHP4-B/CHP426Q.Seq.d/                       1661   0.0
SHK358 (SHK358Q) /CSM/SH/SHK3-C/SHK358Q.Seq.d/                       1310   0.0
SFI842 (SFI842Q) /CSM/SF/SFI8-B/SFI842Q.Seq.d/                       1310   0.0
AHO829 (AHO829Q) /CSM/AH/AHO8-B/AHO829Q.Seq.d/                       1310   0.0
CHP570 (CHP570Q) /CSM/CH/CHP5-C/CHP570Q.Seq.d/                       1294   0.0
CHP367 (CHP367Q) /CSM/CH/CHP3-C/CHP367Q.Seq.d/                       1294   0.0
AHC793 (AHC793Q) /CSM/AH/AHC7-D/AHC793Q.Seq.d/                       1294   0.0
SFK796 (SFK796Q) /CSM/SF/SFK7-D/SFK796Q.Seq.d/                       1292   0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/                       1291   0.0
SHK371 (SHK371Q) /CSM/SH/SHK3-C/SHK371Q.Seq.d/                       1291   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1269   0.0    7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   6e-11  20
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   6e-10  24
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 ma...    46   8e-10  20
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   9e-09  19
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           38   9e-09  20
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    34   1e-08  23
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    34   1e-08  18
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    34   2e-08  19
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           46   4e-08  21
dna update 2005. 9.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   435   e-120
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.17
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/...    35   4.2
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   4.2
protein update 2009. 4.10
PSORT 

 psg: 0.75  gvh: 0.19  alm: 0.24  top: 0.40  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane

>> prediction for CHP426 is mit
5' end seq. ID CHP426F
5' end seq. 
>CHP426F.Seq
ACTGTTGGCCTACTGGNATTATTTAATTTTATAAATAATTAAACAACAACAACAACAACA
ACAACAACAAAAACAACAACAACAGTTTTTACTTTATATTTTTTATTGTTGTAATAAGAA
AATAAAACTATAAATTAAATATATTTGTAATACCATATCCATATAAAATTAATAATATTT
AGGATTTTTCTTTTTTTAATTATAATAATAAAAAAAAATCAACTTACTATAGTTTAATAT
CCTTTTTTTATTTAAATATAATAATAATAATAATACAAATATATATAAATTCAATTTCTT
GTCATAAAAAATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAA
TATAAATAGTAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGG
TGAAGATGATGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGA
AGGTATGGATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACA
AAAGAAACAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGG
CGGTCNNNNNNNNNN
Length of 5' end seq. 615
3' end seq. ID CHP426Z
3' end seq. 
>CHP426Z.Seq
NNNNNNNNNNTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATG
ATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAA
GCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCA
TCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGT
CATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAA
GTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAA
CATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCA
AGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCT
GTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTC
TCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAA
AAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTNCTTGGTACT
TGGTTTNCTTGGTATTANNNTTGTTG
Length of 3' end seq. 686
Connected seq. ID CHP426P
Connected seq. 
>CHP426P.Seq
ACTGTTGGCCTACTGGNATTATTTAATTTTATAAATAATTAAACAACAACAACAACAACA
ACAACAACAAAAACAACAACAACAGTTTTTACTTTATATTTTTTATTGTTGTAATAAGAA
AATAAAACTATAAATTAAATATATTTGTAATACCATATCCATATAAAATTAATAATATTT
AGGATTTTTCTTTTTTTAATTATAATAATAAAAAAAAATCAACTTACTATAGTTTAATAT
CCTTTTTTTATTTAAATATAATAATAATAATAATACAAATATATATAAATTCAATTTCTT
GTCATAAAAAATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAA
TATAAATAGTAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGG
TGAAGATGATGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGA
AGGTATGGATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACA
AAAGAAACAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGG
CGGTC----------TCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAAT
ATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGG
TAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATA
TTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTA
GTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTT
GTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTG
GTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAA
ATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGA
GTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTG
GTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAA
GTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTNCTTG
GTACTTGGTTTNCTTGGTATTANNNTTGTTG
Length of connected seq. 1281
Full length Seq ID -
Full length Seq. -
Length of full length seq. -