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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP412
Library CH
(Link to library)
Clone ID CHP412
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16328-1
Original site URL
Representative seq. ID CHP412P
(Link to Original site)
Representative DNA sequence 
>CHP412 (CHP412Q) /CSM/CH/CHP4-A/CHP412Q.Seq.d/
CTGTTGGCCTACTGGNGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTA
CCATTAATTATTATTTTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGAGAAGAGGCA
TATTTTGAATATAGGATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAA
ATTCAACATGCAAGAAGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGT
AAAATTATTAACAAACCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGAC
TCAGTTACTTTTTTTGAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAAT
GGATATATTGATAAACTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCA
CTTGTTAGGGAATTATATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAA
AATCAACAAGTAAAACAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAA
AATAAAATTCATCCAGAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTC
CGTATCAAAAATATTCATGAAAAACCAGTTTATGAAGGTGATATCAAACAAGATTTATTA
CGTCGTAAAAATAAAAATAATCCAGAGAAACAAGTATATGAAGGTGATATTAGACAAGAT
TTATTACGTCGTAAAXXXXXXXXXXTTAATCGTGATGANAAAGTTACGAAGGTNATATNA
ACCANGGCTTNTCAGNTNGTAAAAATCATCAAAGANAAANCTGTTTATGNNGGTGATATC
AACCAAGACTTATTACGTCGTAAAATTCTTGATAANCNTGATTCAAAACAAGTATATCCA
GGTGATGTTATTCCAAGATATTTTACGTGTTATTAATCGTGATGAAAAAGAAGTTTATGA
AGGTGATATTAAACAAGACTTATTACATCGTAATAACAAAAATCGTCAAGAGAAACCAGT
ATATGAAGGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATCAAGAAGA
ACAAGTATATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGAAGAGAA
AGAAGTTTACGAAGGTGATATTAAACAAAATTTGTTGCGTCGAAAAAATCATGATCATCC
AGAAAAAGAAATTTATGAAGGTGATATTAAACAAGATTTATTACGTCGTAATAACAAAAA
CCATCAAGAGAAACTTGTTTATGAAGGTGACATTAAACAAGATTTATTACGTCGTAATAA
CAAAAATCATAAAGAAGAACAAGTATATCAAGGTGATATTATTCAAGATATTTTACGTGT
TTTAAATCATGGAGAAAAAGAAGTAAATGAGGATGAAATTGAAAAAGATTTGATGCAACG
TAAAAATCACCATCAAGAAGAAGAGGCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACT
TTGGAATAAACAAAGTCAAGCATTTGTTGAACAACATCCAAACCAACACAACAATCAAAA
AACAATTCACTTGTCAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxf*iii*KMNKFYSLPLIIILIISCGAFFIHGEEAYFEYRIHNEKFIFKLSDDIK
IQHARRVLSGDEISLTNVVGKIINKPIEYNINWDFHLDPDSVTFFESETEFCNQKFQYVN
GYIDKLCESDNCYFCPWDGSLVRELYFGDIKQDLLLRNNENQQVKQVYEGDIKQDLIRRK
NKIHPEKQMHEEDIKQQVFFRIKNIHEKPVYEGDIKQDLLRRKNKNNPEKQVYEGDIRQD
LLRRK---

---NRDXKVTKVIXTXAXQXVKIIKXKXVYXGDINQDLLRRKILDXXDSKQVYPGDVIPR
YFTCY*s**krsl*r*y*trlits**qkssretsi*r*h*trfits**qkssrrtsisr*
yysryftcfks*rerslrr*y*tkfvaskks*ssrkrnl*r*y*trfits**qkpsretc
l*r*h*trfits**qks*rrtsisr*yysryftcfkswrkrsk*g*n*krfdat*kspsr
rrgf*rlgrrnwktle*tkssic*ttskptqqsknnslvk
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxf*iii*KMNKFYSLPLIIILIISCGAFFIHGEEAYFEYRIHNEKFIFKLSDDIK
IQHARRVLSGDEISLTNVVGKIINKPIEYNINWDFHLDPDSVTFFESETEFCNQKFQYVN
GYIDKLCESDNCYFCPWDGSLVRELYFGDIKQDLLLRNNENQQVKQVYEGDIKQDLIRRK
NKIHPEKQMHEEDIKQQVFFRIKNIHEKPVYEGDIKQDLLRRKNKNNPEKQVYEGDIRQD
LLRRK---

---livmxklrrxyxpxlxxx*ksskxxlfmxvistktyyvvkflixxiqnkyiqvmlfq
dilrvinrdekevyegdikqdllhrnnknrqekpvyegdikqdllrrnnknhqeeqvyqg
diiqdilrvlnheekevyegdikqnllrrknhdhpekeiyegdikqdllrrnnknhqekl
vyegdikqdllrrnnknhkeeqvyqgdiiqdilrvlnhgekevnedeiekdlmqrknhhq
eeeasedleeeigklwnkqsqafveqhpnqhnnqktihls

Frame B:
cwptgvfk**ykk*infihyh*llf**frvvlflstekrhilnigfimknlfsnlvmilk
fnmqeeyylvmk*v*qtl*vklltnq*niiligifiltqtqllflnlkqsfvtknssm*m
dilinfvkviivifahgmvhllgnyileilnkiyyfvimkink*nkymkvilnki*fvvk
ikfiqknkcmkrilnnkffsvskifmknqfmkvisnkiyyvvkikiiqrnkymkvildki
yyvv---

---*s**xsyegxxnxgxsxxknhqrxxclxx*yqprlits*ns**x*fktsisr*cysk
ifyvllivmkkkfmkvilnktyyivitkivkrnqymkvtlnkiyyvvitkiikknkyikv
ilfkifyvf*imkrkkftkvilnkiccvekimiiqkkkfmkvilnkiyyvvitktikrnl
fmkvtlnkiyyvvitkiikknkyikvilfkifyvf*imekkk*mrmklkki*cnvkitik
kkrllktwkkklenfginkvkhllnniqtnttikkqftcq

Frame C:
vgllxflnnnikne*ilfitinyyfnnfvwcffyprrrgif*i*ds**kiyfqt***y*n
stckksiiw**nkfnkrcr*ny*qtnri*y*lgfss*prlsyff*i*nrvl*pkipvckw
iy**tl*k**llflpmgwftc*giifwry*trsits***kstsktsi*r*y*trfnss*k
*nssrktna*rgy*ttsffpyqkys*ktsl*r*yqtrfits*k*k*sretsi*r*y*trf
its*---

---NRDXKVTKVIXTXAXQXVKIIKXKXVYXGDINQDLLRRKILDXXDSKQVYPGDVIPR
YFTCY*s**krsl*r*y*trlits**qkssretsi*r*h*trfits**qkssrrtsisr*
yysryftcfks*rerslrr*y*tkfvaskks*ssrkrnl*r*y*trfits**qkpsretc
l*r*h*trfits**qks*rrtsisr*yysryftcfkswrkrsk*g*n*krfdat*kspsr
rrgf*rlgrrnwktle*tkssic*ttskptqqsknnslvk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP412 (CHP412Q) /CSM/CH/CHP4-A/CHP412Q.Seq.d/                       2861   0.0
SHG761 (SHG761Q) /CSM/SH/SHG7-C/SHG761Q.Seq.d/                       1513   0.0
AHE793 (AHE793Q) /CSM/AH/AHE7-D/AHE793Q.Seq.d/                       1505   0.0
CHI482 (CHI482Q) /CSM/CH/CHI4-D/CHI482Q.Seq.d/                       1501   0.0
AHL271 (AHL271Q) /CSM/AH/AHL2-C/AHL271Q.Seq.d/                       1499   0.0
AHE894 (AHE894Q) /CSM/AH/AHE8-D/AHE894Q.Seq.d/                       1495   0.0
AFH465 (AFH465Q) /CSM/AF/AFH4-C/AFH465Q.Seq.d/                       1495   0.0
CHR731 (CHR731Q) /CSM/CH/CHR7-B/CHR731Q.Seq.d/                       1493   0.0
SHL617 (SHL617Q) /CSM/SH/SHL6-A/SHL617Q.Seq.d/                       1491   0.0
SHC143 (SHC143Q) /CSM/SH/SHC1-B/SHC143Q.Seq.d/                       1491   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M29237|M29237.1 D.discoideum cyclic AMP-inducible protein gene, complete cds.   846   0.0    15
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   3e-11  25
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   4e-11  22
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   2e-10  30
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44   2e-10  23
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   2e-10  23
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   3e-10  31
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    34   9e-10  22
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             38   1e-09  22
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36   1e-09  24
dna update 2005. 9.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...    96   4e-18
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    84   1e-14
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    80   2e-13
(Q9MTL3) RecName: Full=Acetyl-coenzyme A carboxylase carboxyl tr...    60   2e-07
AL844506_118(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    59   4e-07
AF056936_1(AF056936|pid:none) Plasmodium falciparum mature paras...    50   2e-04
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr...    49   6e-04
EU262889_31(EU262889|pid:none) Oenothera biennis chloroplast, co...    48   8e-04
AM180355_2790(AM180355|pid:none) Clostridium difficile 630 compl...    47   0.001
BA000023_2073(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    45   0.005
protein update 2009. 4.10
PSORT 

 psg: 0.98  gvh: 0.63  alm: 0.19  top: 0.27  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.71  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CHP412 is cyt
5' end seq. ID CHP412F
5' end seq. 
>CHP412F.Seq
CTGTTGGCCTACTGGNGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTA
CCATTAATTATTATTTTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGAGAAGAGGCA
TATTTTGAATATAGGATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAA
ATTCAACATGCAAGAAGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGT
AAAATTATTAACAAACCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGAC
TCAGTTACTTTTTTTGAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAAT
GGATATATTGATAAACTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCA
CTTGTTAGGGAATTATATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAA
AATCAACAAGTAAAACAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAA
AATAAAATTCATCCAGAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTC
CGTATCAAAAATATTCATGAAAAACCAGTTTATGAAGGTGATATCAAACAAGATTTATTA
CGTCGTAAAAATAAAAATAATCCAGAGAAACAAGTATATGAAGGTGATATTAGACAAGAT
TTATTACGTCGTAAANNNNNNNNNN
Length of 5' end seq. 745
3' end seq. ID CHP412Z
3' end seq. 
>CHP412Z.Seq
NNNNNNNNNNTTAATCGTGATGANAAAGTTACGAAGGTNATATNAACCANGGCTTNTCAG
NTNGTAAAAATCATCAAAGANAAANCTGTTTATGNNGGTGATATCAACCAAGACTTATTA
CGTCGTAAAATTCTTGATAANCNTGATTCAAAACAAGTATATCCAGGTGATGTTATTCCA
AGATATTTTACGTGTTATTAATCGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACA
AGACTTATTACATCGTAATAACAAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACAT
TAAACAAGATTTATTACGTCGTAATAACAAAAATCATCAAGAAGAACAAGTATATCAAGG
TGATATTATTCAAGATATTTTACGTGTTTTAAATCATGAAGAGAAAGAAGTTTACGAAGG
TGATATTAAACAAAATTTGTTGCGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTA
TGAAGGTGATATTAAACAAGATTTATTACGTCGTAATAACAAAAACCATCAAGAGAAACT
TGTTTATGAAGGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATAAAGA
AGAACAAGTATATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGA
AAAAGAAGTAAATGAGGATGAAATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCA
AGAAGAAGAGGCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAG
TCAAGCATTTGTTGAACAACATCCAAACCAACACAACAATCAAAAAACAATTCACTTGTC
AAG
Length of 3' end seq. 843
Connected seq. ID CHP412P
Connected seq. 
>CHP412P.Seq
CTGTTGGCCTACTGGNGTTTTTAAATAATAATATAAAAAATGAATAAATTTTATTCATTA
CCATTAATTATTATTTTAATAATTTCGTGTGGTGCTTTTTTTATCCACGGAGAAGAGGCA
TATTTTGAATATAGGATTCATAATGAAAAATTTATTTTCAAACTTAGTGATGATATTAAA
ATTCAACATGCAAGAAGAGTATTATCTGGTGATGAAATAAGTTTAACAAACGTTGTAGGT
AAAATTATTAACAAACCAATAGAATATAATATTAATTGGGATTTTCATCTTGACCCAGAC
TCAGTTACTTTTTTTGAATCTGAAACAGAGTTTTGTAACCAAAAATTCCAGTATGTAAAT
GGATATATTGATAAACTTTGTGAAAGTGATAATTGTTATTTTTGCCCATGGGATGGTTCA
CTTGTTAGGGAATTATATTTTGGAGATATTAAACAAGATCTATTACTTCGTAATAATGAA
AATCAACAAGTAAAACAAGTATATGAAGGTGATATTAAACAAGATTTAATTCGTCGTAAA
AATAAAATTCATCCAGAAAAACAAATGCATGAAGAGGATATTAAACAACAAGTTTTTTTC
CGTATCAAAAATATTCATGAAAAACCAGTTTATGAAGGTGATATCAAACAAGATTTATTA
CGTCGTAAAAATAAAAATAATCCAGAGAAACAAGTATATGAAGGTGATATTAGACAAGAT
TTATTACGTCGTAAA----------TTAATCGTGATGANAAAGTTACGAAGGTNATATNA
ACCANGGCTTNTCAGNTNGTAAAAATCATCAAAGANAAANCTGTTTATGNNGGTGATATC
AACCAAGACTTATTACGTCGTAAAATTCTTGATAANCNTGATTCAAAACAAGTATATCCA
GGTGATGTTATTCCAAGATATTTTACGTGTTATTAATCGTGATGAAAAAGAAGTTTATGA
AGGTGATATTAAACAAGACTTATTACATCGTAATAACAAAAATCGTCAAGAGAAACCAGT
ATATGAAGGTGACATTAAACAAGATTTATTACGTCGTAATAACAAAAATCATCAAGAAGA
ACAAGTATATCAAGGTGATATTATTCAAGATATTTTACGTGTTTTAAATCATGAAGAGAA
AGAAGTTTACGAAGGTGATATTAAACAAAATTTGTTGCGTCGAAAAAATCATGATCATCC
AGAAAAAGAAATTTATGAAGGTGATATTAAACAAGATTTATTACGTCGTAATAACAAAAA
CCATCAAGAGAAACTTGTTTATGAAGGTGACATTAAACAAGATTTATTACGTCGTAATAA
CAAAAATCATAAAGAAGAACAAGTATATCAAGGTGATATTATTCAAGATATTTTACGTGT
TTTAAATCATGGAGAAAAAGAAGTAAATGAGGATGAAATTGAAAAAGATTTGATGCAACG
TAAAAATCACCATCAAGAAGAAGAGGCTTCTGAAGACTTGGAAGAAGAAATTGGAAAACT
TTGGAATAAACAAAGTCAAGCATTTGTTGAACAACATCCAAACCAACACAACAATCAAAA
AACAATTCACTTGTCAAG
Length of connected seq. 1568
Full length Seq ID -
Full length Seq. -
Length of full length seq. -