NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP378
Library CH
(Link to library)
Clone ID CHP378
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15346-1|Contig-U15652-1
Original site URL
Representative seq. ID CHP378P
(Link to Original site)
Representative DNA sequence 
>CHP378 (CHP378Q) /CSM/CH/CHP3-D/CHP378Q.Seq.d/
ACTGTTGGCCTACTGGNAATTTTTATATCTTCTCATAGTTTTAAAAATTATTAATAATAT
TTTAGAGAATTCCAATATGGAAGATAAAAACATTCTTTATGAATCAATTCCGACTAGTAC
AAATAATAATGAACTATTACCACCACAATTAACACCAATAAAACCAAACATTACACAAGA
AGAACAAGATTTATTAGATAATATTGTAAAAAATGAATCTATAATTCCAATGTCACCAAA
AATACCAATTAATATTAATAATAATAATACTATTAATAACAATAATAATAATAATAGTAA
TAATGTTAGTAGTGGTAATCATATAACAAATAGTAATAGTAATAGTAGTGGTAATTTAAA
GGATAGTTTTGATTTAAATTCTGTAATTGATTCAACTTGTGTTATGACATCACCAATTGC
AGTTTCACCAACAATCATTAATAAATTAATTAACAATAAGGAAAACATTTTAAATATTAA
CGGTATCCTCGAGAATAATATCAATTGTACCAATGATAATCAAGAATTAATTAATATACT
TTTAAATAAAAATCAATTACAACAACAGCAACAACAACAACAACAATTATATTTACAXXX
XXXXXXXTGTTTGGGGNTTTGAAGTTTTAGNTGANGCGATCAAACANGNTTTTATCNCTA
AATTCAATAAATTTTCCCCNCAAANGNATTCAAAATTNTTTGNACTTTTATCCGANACAA
NAGTTGACCCAAGGAATANAAATTTCNCTGAAAGNTCATGGGGNGNAAANAANANAATTG
GNTTTGNACCNTTTCCNTTAGNTTCAATTGTTGNAANAGTATTTNATAAATTCNTTCCNT
CAAAAGGNATTTTTGGNANATTTTTAANGGNTCAAATTTANANANGTTTTGGACTTTTAA
AAANATTTATAAAAATCNTTATCCTCGGNCAATGTTTATCAAAAACCCCCNATTATGATA
ACNCAACNACAACTATTTTATCATCATCATCATTTTCATCATCATCAAATTCATTAAANA
CCCCTTCAACAACATCAACCNCAACTTCAACNACNAATGATAAAAAAAACNATTAAAAGA
AAAAAAAAAATTAAAAATAAAAAAAACGGAAAAGGAGGCATCCNTTTTTTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
LLAYWXFLYLLIVLKIINNILENSNMEDKNILYESIPTSTNNNELLPPQLTPIKPNITQE
EQDLLDNIVKNESIIPMSPKIPININNNNTINNNNNNNSNNVSSGNHITNSNSNSSGNLK
DSFDLNSVIDSTCVMTSPIAVSPTIINKLINNKENILNINGILENNINCTNDNQELINIL
LNKNQLQQQQQQQQQLYL---

---VWGFEVLXXAIKXXFIXKFNKFSPQXXSKXFXLLSXTXVDPRNXNFXEXSWGXXXXI
GFXPFPLXSIVXXVFXKFXPSKGIFGXFLXXQIXXXFGLLKXFIKIXILGQCLSKTPXYD
NXTTTILSSSSFSSSSNSLXTPSTTSTXTSTTNDKKNX*kkkkn*k*kkrkrrhpfff
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxifisshsfkny**yfrefqygr*khsl*insd*yk***titttintnktkhytr
rtrfir*yckk*iynsnvtkntn*y****yy**q*******c**w*synk******w*fk
g*f*fkfcn*fnlcyditncsftnnh**in*q*gkhfky*rypre*yqlyq**srin*yt
fk*ksitttatttttiift---

---clgx*sfx*xdqtxfyx*iq*ifpxxxfkixxtfirxxs*pkexkfx*kxmgxkxxn
wxxtxsxxfncxxsix*ixsxkrxfwxifxgsnlxxfwtfkxiyknxyprxmfiknpxl*
*xnxnyfiiiiifiiikfikxpfnninxnfnxx**kkxlkekkklkikktekeasxff

Frame B:
LLAYWXFLYLLIVLKIINNILENSNMEDKNILYESIPTSTNNNELLPPQLTPIKPNITQE
EQDLLDNIVKNESIIPMSPKIPININNNNTINNNNNNNSNNVSSGNHITNSNSNSSGNLK
DSFDLNSVIDSTCVMTSPIAVSPTIINKLINNKENILNINGILENNINCTNDNQELINIL
LNKNQLQQQQQQQQQLYL---

---VWGFEVLXXAIKXXFIXKFNKFSPQXXSKXFXLLSXTXVDPRNXNFXEXSWGXXXXI
GFXPFPLXSIVXXVFXKFXPSKGIFGXFLXXQIXXXFGLLKXFIKIXILGQCLSKTPXYD
NXTTTILSSSSFSSSSNSLXTPSTTSTXTSTTNDKKNX*kkkkn*k*kkrkrrhpfff

Frame C:
cwptgnfyifs*f*klliif*ripiwkiktffmnqfrlvqiimnyyhhn*hq*nqtlhkk
nkiy*iil*kmnl*fqchqkyqliliiiillitiiiiivimlvvvii*qivivivvvi*r
ivli*il*liqlvl*hhqlqfhqqslin*ltirktf*iltvssriisivpmiikn*liyf
*ikinynnsnnnnnnyiy---

---fgxlkf*xxrsnxxlslnsinfpxkxiqnxlxfypxqxltqgixislkxhgxxxxxl
xlxxfx*xqllxxyxinsfxqkxflxxf*xxkfxxvldf*kxl*kslssxnvyqkppimi
tqxqlfyhhhhfhhhqih*xplqqhqpqlqxxmikktikrkkkiknkkngkggixfff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP378 (CHP378Q) /CSM/CH/CHP3-D/CHP378Q.Seq.d/                        470   e-131
VHL745 (VHL745Q) /CSM/VH/VHL7-B/VHL745Q.Seq.d/                        442   e-123
VHL639 (VHL639Q) /CSM/VH/VHL6-B/VHL639Q.Seq.d/                        442   e-123
VHK326 (VHK326Q) /CSM/VH/VHK3-B/VHK326Q.Seq.d/                        442   e-123
SHL353 (SHL353Q) /CSM/SH/SHL3-C/SHL353Q.Seq.d/                        442   e-123
CHP750 (CHP750Q) /CSM/CH/CHP7-C/CHP750Q.Seq.d/                        442   e-123
CHN218 (CHN218Q) /CSM/CH/CHN2-A/CHN218Q.Seq.d/                        442   e-123
CHL245 (CHL245Q) /CSM/CH/CHL2-B/CHL245Q.Seq.d/                        442   e-123
CHI232 (CHI232Q) /CSM/CH/CHI2-B/CHI232Q.Seq.d/                        442   e-123
AFL110 (AFL110Q) /CSM/AF/AFL1-A/AFL110Q.Seq.d/                        442   e-123
own update 2002.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   418   0.0    15
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38   1e-07  17
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   3e-06  20
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    42   4e-06  25
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    32   5e-06  19
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   3e-05  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   3e-05  22
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   5e-05  21
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         34   1e-04  16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   2e-04  19
dna update 2005. 9.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q550C1) RecName: Full=Protein TAPT1 homolog;                         146   1e-33
AC116977_15(AC116977|pid:none) Dictyostelium discoideum chromoso...   146   1e-33
protein update 2008.11. 6
PSORT 

 psg: 0.96  gvh: 0.37  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for CHP378 is mit
5' end seq. ID CHP378F
5' end seq. 
>CHP378F.Seq
ACTGTTGGCCTACTGGNAATTTTTATATCTTCTCATAGTTTTAAAAATTATTAATAATAT
TTTAGAGAATTCCAATATGGAAGATAAAAACATTCTTTATGAATCAATTCCGACTAGTAC
AAATAATAATGAACTATTACCACCACAATTAACACCAATAAAACCAAACATTACACAAGA
AGAACAAGATTTATTAGATAATATTGTAAAAAATGAATCTATAATTCCAATGTCACCAAA
AATACCAATTAATATTAATAATAATAATACTATTAATAACAATAATAATAATAATAGTAA
TAATGTTAGTAGTGGTAATCATATAACAAATAGTAATAGTAATAGTAGTGGTAATTTAAA
GGATAGTTTTGATTTAAATTCTGTAATTGATTCAACTTGTGTTATGACATCACCAATTGC
AGTTTCACCAACAATCATTAATAAATTAATTAACAATAAGGAAAACATTTTAAATATTAA
CGGTATCCTCGAGAATAATATCAATTGTACCAATGATAATCAAGAATTAATTAATATACT
TTTAAATAAAAATCAATTACAACAACAGCAACAACAACAACAACAATTATATTTACANNN
NNNNNNN
Length of 5' end seq. 607
3' end seq. ID CHP378Z
3' end seq. 
>CHP378Z.Seq
NNNNNNNNNNTGTTTGGGGNTTTGAAGTTTTAGNTGANGCGATCAAACANGNTTTTATCN
CTAAATTCAATAAATTTTCCCCNCAAANGNATTCAAAATTNTTTGNACTTTTATCCGANA
CAANAGTTGACCCAAGGAATANAAATTTCNCTGAAAGNTCATGGGGNGNAAANAANANAA
TTGGNTTTGNACCNTTTCCNTTAGNTTCAATTGTTGNAANAGTATTTNATAAATTCNTTC
CNTCAAAAGGNATTTTTGGNANATTTTTAANGGNTCAAATTTANANANGTTTTGGACTTT
TAAAAANATTTATAAAAATCNTTATCCTCGGNCAATGTTTATCAAAAACCCCCNATTATG
ATAACNCAACNACAACTATTTTATCATCATCATCATTTTCATCATCATCAAATTCATTAA
ANACCCCTTCAACAACATCAACCNCAACTTCAACNACNAATGATAAAAAAAACNATTAAA
AGAAAAAAAAAAATTAAAAATAAAAAAAACGGAAAAGGAGGCATCCNTTTTTTTTTT
Length of 3' end seq. 537
Connected seq. ID CHP378P
Connected seq. 
>CHP378P.Seq
ACTGTTGGCCTACTGGNAATTTTTATATCTTCTCATAGTTTTAAAAATTATTAATAATAT
TTTAGAGAATTCCAATATGGAAGATAAAAACATTCTTTATGAATCAATTCCGACTAGTAC
AAATAATAATGAACTATTACCACCACAATTAACACCAATAAAACCAAACATTACACAAGA
AGAACAAGATTTATTAGATAATATTGTAAAAAATGAATCTATAATTCCAATGTCACCAAA
AATACCAATTAATATTAATAATAATAATACTATTAATAACAATAATAATAATAATAGTAA
TAATGTTAGTAGTGGTAATCATATAACAAATAGTAATAGTAATAGTAGTGGTAATTTAAA
GGATAGTTTTGATTTAAATTCTGTAATTGATTCAACTTGTGTTATGACATCACCAATTGC
AGTTTCACCAACAATCATTAATAAATTAATTAACAATAAGGAAAACATTTTAAATATTAA
CGGTATCCTCGAGAATAATATCAATTGTACCAATGATAATCAAGAATTAATTAATATACT
TTTAAATAAAAATCAATTACAACAACAGCAACAACAACAACAACAATTATATTTACA---
-------TGTTTGGGGNTTTGAAGTTTTAGNTGANGCGATCAAACANGNTTTTATCNCTA
AATTCAATAAATTTTCCCCNCAAANGNATTCAAAATTNTTTGNACTTTTATCCGANACAA
NAGTTGACCCAAGGAATANAAATTTCNCTGAAAGNTCATGGGGNGNAAANAANANAATTG
GNTTTGNACCNTTTCCNTTAGNTTCAATTGTTGNAANAGTATTTNATAAATTCNTTCCNT
CAAAAGGNATTTTTGGNANATTTTTAANGGNTCAAATTTANANANGTTTTGGACTTTTAA
AAANATTTATAAAAATCNTTATCCTCGGNCAATGTTTATCAAAAACCCCCNATTATGATA
ACNCAACNACAACTATTTTATCATCATCATCATTTTCATCATCATCAAATTCATTAAANA
CCCCTTCAACAACATCAACCNCAACTTCAACNACNAATGATAAAAAAAACNATTAAAAGA
AAAAAAAAAATTAAAAATAAAAAAAACGGAAAAGGAGGCATCCNTTTTTTTTTT
Length of connected seq. 1124
Full length Seq ID -
Full length Seq. -
Length of full length seq. -