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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP377
Library CH
(Link to library)
Clone ID CHP377
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHP377P
(Link to Original site)
Representative DNA sequence 
>CHP377 (CHP377Q) /CSM/CH/CHP3-D/CHP377Q.Seq.d/
CTGTTGGCCTACTGGNATTCTCAAAAATAAATTAAATAACTTTTAAAACAAAAAATTTAA
ATAAATAAAATAAAAAAATTAAAAATAAAAAAATGATAAATATTGAAGATATTTCAAAAT
CTTCAAATCAAAGTGAAGAAAAACAATTAAAAAGTACAAGTTCAAAAACAAAATACCCAT
TCGCAGCAAAAAGTTTATTCAAAGGTTCAAATAATATTACACCATATTATTTATCAACCA
GTAATACATTCCAATGTGTAGCATCTGAGTCAATCCAAACATGGCTTCTTTCAGATGATG
GTCATATCTTTACATCCAGTGGTAATTTTGTTTTAGATGTTTCATCAGGTGGTTATTTTG
TTGAATTAGTACAACTTAATTCAAATTCAAAAACTCAAATTTGGACAATTGATACAACAA
ATAATAAAATTCAAAACCAAGGTAATGGTAAATACCTTGATATCGACAATTTGAATATTT
GTGTTGCACCTTTAAATGGAAACGCAACTCAAAAATGGACAACTTTTAGAAGGGCACCAA
TTCCAACTGGTAATXXXXXXXXXXATTATCAAATTTACTTTACACCAGCTGGTTACTATG
CACCAGTTTCAAGTGATGATTACTCTTATACTGATAGTACTGGAACCTATATTATGGCGG
AAATCGATAACTGTAACTCCCATCCTCCAAAAGCTTTAACCGATAAGTTATGGAATAATG
GAGTTTCAAAACAAGAAGTTTTCACATCTTCCTATGGTTGGAATTTAGCTACCTCTGTGA
CCTATTACAATATGGTCGGTAAATATAGTGGAATGTTTAAATTATCTTTCCCAACTGTAA
AGAATTTTACATCAGTACCAATGCAATTCGTAATGACCAATGGAAGTGATAGAGTTGGTA
CTTTCAATGTTAAAACTCATTTTGCTGGATTAGCCTCAACATATTACTATTCAGGTGCTC
TTGGTCATCATTATTACGATATTGCTGTAATTGATATTAACGGTAACAAGGTTGCAAATT
TCACAGTTGACAATAATTTGGAAGCTCTTGAAGGTAGTTATGTTTCAATTAAAACTAATT
CATTAGTTGTTCAACCAGGCTATGTTGTTGGTAATCCAACTTGTAANCAAGGTAGTTTTT
NNNCAAGGATTTGCTGCTTCAATTTTAATTNCCAATTTATAAANCAAATAAAAAANNCGN
ATTTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
vgllxfskin*itfktknlnk*NKKIKNKKMINIEDISKSSNQSEEKQLKSTSSKTKYPF
AAKSLFKGSNNITPYYLSTSNTFQCVASESIQTWLLSDDGHIFTSSGNFVLDVSSGGYFV
ELVQLNSNSKTQIWTIDTTNNKIQNQGNGKYLDIDNLNICVAPLNGNATQKWTTFRRAPI
PTGN---

---YQIYFTPAGYYAPVSSDDYSYTDSTGTYIMAEIDNCNSHPPKALTDKLWNNGVSKQE
VFTSSYGWNLATSVTYYNMVGKYSGMFKLSFPTVKNFTSVPMQFVMTNGSDRVGTFNVKT
HFAGLASTYYYSGALGHHYYDIAVIDINGNKVANFTVDNNLEALEGSYVSIKTNSLVVQP
GYVVGNPTCXQGSFXXRICCFNFNXQFIXQIKXXXLK
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxsqk*ik*llkqki*inkikklkikk**ilkifqnlqikvkknn*kvqvqkqnth
sqqkvyskvqiilhhiiyqpvihsnv*hlsqskhgffqmmvislhpvvilf*mfhqvvil
ln*ynliqiqklkfgqliqqiikfktkvmvntlisti*ifvlhl*metqlkngqlleghq
fqlv---

---iikftlhqlvtmhqfqvmitlilivlepilwrksitvtpilqkl*pisygimefqnk
kfshlpmvgi*lpl*pitiwsvniveclnylsql*rilhqyqcns**pmevielvlsmlk
lilld*pqhitiqvllviiitill*liltvtrlqisqltiiwkllkvvmfqlklih*lfn
qamllviqlvxkvvfxqgfaasilixnl*xk*kxri*

Frame B:
cwptgilknklnnf*nkkfk*ik*kn*k*kndky*ryfkifksk*rktikkykfknkipi
rskkfiqrfk*yytilfinq*yipmcsi*vnpnmasfr*wsylyiqw*fcfrcfirwlfc
*istt*fkfknsnldn*ynk**nskpr*w*ip*yrqfeylcctfkwkrnskmdnf*kgtn
snw*---

---lsnllytswllctsfk**llly**ywnlyyggnr*l*lpssksfnr*vme*wsfktr
sfhiflwlefsylcdllqygr*i*wnv*iifpnckefyistnairndqwk**swyfqc*n
sfcwislnillfrcswssllryccn*y*r*qgckfhs*q*fgss*r*lcfn*n*fiscst
rlccw*snl*xr*fxxkdlllqf*xpiykxnkkxxfk

Frame C:
vgllxfskin*itfktknlnk*NKKIKNKKMINIEDISKSSNQSEEKQLKSTSSKTKYPF
AAKSLFKGSNNITPYYLSTSNTFQCVASESIQTWLLSDDGHIFTSSGNFVLDVSSGGYFV
ELVQLNSNSKTQIWTIDTTNNKIQNQGNGKYLDIDNLNICVAPLNGNATQKWTTFRRAPI
PTGN---

---YQIYFTPAGYYAPVSSDDYSYTDSTGTYIMAEIDNCNSHPPKALTDKLWNNGVSKQE
VFTSSYGWNLATSVTYYNMVGKYSGMFKLSFPTVKNFTSVPMQFVMTNGSDRVGTFNVKT
HFAGLASTYYYSGALGHHYYDIAVIDINGNKVANFTVDNNLEALEGSYVSIKTNSLVVQP
GYVVGNPTCXQGSFXXRICCFNFNXQFIXQIKXXXLK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP377 (CHP377Q) /CSM/CH/CHP3-D/CHP377Q.Seq.d/                       1919   0.0
VHP628 (VHP628Q) /CSM/VH/VHP6-B/VHP628Q.Seq.d/                       1183   0.0
VHO867 (VHO867Q) /CSM/VH/VHO8-C/VHO867Q.Seq.d/                       1183   0.0
VHI409 (VHI409Q) /CSM/VH/VHI4-A/VHI409Q.Seq.d/                       1183   0.0
VHI322 (VHI322Q) /CSM/VH/VHI3-A/VHI322Q.Seq.d/                       1183   0.0
CHI749 (CHI749Q) /CSM/CH/CHI7-C/CHI749Q.Seq.d/                       1183   0.0
VHQ307 (VHQ307Q) /CSM/VH/VHQ3-A/VHQ307Q.Seq.d/                       1176   0.0
VHK125 (VHK125Q) /CSM/VH/VHK1-B/VHK125Q.Seq.d/                       1176   0.0
VHF611 (VHF611Q) /CSM/VH/VHF6-A/VHF611Q.Seq.d/                       1136   0.0
VHK155 (VHK155Q) /CSM/VH/VHK1-C/VHK155Q.Seq.d/                       1128   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY282569|AY282569.1 Dictyostelium discoideum calcium up-regulated protein (cupC) gene, complete cds.  1128   0.0    3
AY282574|AY282574.1 Dictyostelium discoideum calcium up-regulated protein (cupA) gene, complete cds.  1057   0.0    3
AY282572|AY282572.1 Dictyostelium discoideum calcium up-regulated protein (cupF) gene, complete cds.  1041   0.0    3
AY282571|AY282571.1 Dictyostelium discoideum calcium up-regulated protein (cupE) gene, complete cds.  1025   0.0    3
AY282568|AY282568.1 Dictyostelium discoideum calcium up-regulated protein (cupB) gene, complete cds.   716   0.0    10
AY282573|AY282573.1 Dictyostelium discoideum calcium up-regulated protein (cupG) gene, complete cds.   684   0.0    9
AY282570|AY282570.1 Dictyostelium discoideum calcium up-regulated protein (cupD) gene, complete cds.   478   0.0    5
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   0.003  25
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    46   0.005  15
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32   0.041  13
dna update 2005. 9.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7Z202) RecName: Full=Calcium up-regulated protein C;  &AY28256...   362   1e-98
(Q7Z1I0) RecName: Full=Calcium up-regulated protein F;                351   2e-95
AY282572_1(AY282572|pid:none) Dictyostelium discoideum calcium u...   350   7e-95
(Q55FW5) RecName: Full=Calcium up-regulated protein A;                296   1e-78
AY282574_1(AY282574|pid:none) Dictyostelium discoideum calcium u...   294   4e-78
(Q7Z1Z9) RecName: Full=Calcium up-regulated protein G;  &AY28257...   293   1e-77
(Q54Z20) RecName: Full=Putative calcium up-regulated protein J;        47   0.002
AY149015_1(AY149015|pid:none) Plasmodium chabaudi chabaudi PC13A...    40   0.21
BC121700_1(BC121700|pid:none) Xenopus tropicalis GalNAc transfer...    38   0.60
AP008971_694(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,...    37   1.0
protein update 2009. 4.10
PSORT 

 psg: 0.66  gvh: 0.22  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CHP377 is nuc
5' end seq. ID CHP377F
5' end seq. 
>CHP377F.Seq
CTGTTGGCCTACTGGNATTCTCAAAAATAAATTAAATAACTTTTAAAACAAAAAATTTAA
ATAAATAAAATAAAAAAATTAAAAATAAAAAAATGATAAATATTGAAGATATTTCAAAAT
CTTCAAATCAAAGTGAAGAAAAACAATTAAAAAGTACAAGTTCAAAAACAAAATACCCAT
TCGCAGCAAAAAGTTTATTCAAAGGTTCAAATAATATTACACCATATTATTTATCAACCA
GTAATACATTCCAATGTGTAGCATCTGAGTCAATCCAAACATGGCTTCTTTCAGATGATG
GTCATATCTTTACATCCAGTGGTAATTTTGTTTTAGATGTTTCATCAGGTGGTTATTTTG
TTGAATTAGTACAACTTAATTCAAATTCAAAAACTCAAATTTGGACAATTGATACAACAA
ATAATAAAATTCAAAACCAAGGTAATGGTAAATACCTTGATATCGACAATTTGAATATTT
GTGTTGCACCTTTAAATGGAAACGCAACTCAAAAATGGACAACTTTTAGAAGGGCACCAA
TTCCAACTGGTAATNNNNNNNNNN
Length of 5' end seq. 564
3' end seq. ID CHP377Z
3' end seq. 
>CHP377Z.Seq
NNNNNNNNNNATTATCAAATTTACTTTACACCAGCTGGTTACTATGCACCAGTTTCAAGT
GATGATTACTCTTATACTGATAGTACTGGAACCTATATTATGGCGGAAATCGATAACTGT
AACTCCCATCCTCCAAAAGCTTTAACCGATAAGTTATGGAATAATGGAGTTTCAAAACAA
GAAGTTTTCACATCTTCCTATGGTTGGAATTTAGCTACCTCTGTGACCTATTACAATATG
GTCGGTAAATATAGTGGAATGTTTAAATTATCTTTCCCAACTGTAAAGAATTTTACATCA
GTACCAATGCAATTCGTAATGACCAATGGAAGTGATAGAGTTGGTACTTTCAATGTTAAA
ACTCATTTTGCTGGATTAGCCTCAACATATTACTATTCAGGTGCTCTTGGTCATCATTAT
TACGATATTGCTGTAATTGATATTAACGGTAACAAGGTTGCAAATTTCACAGTTGACAAT
AATTTGGAAGCTCTTGAAGGTAGTTATGTTTCAATTAAAACTAATTCATTAGTTGTTCAA
CCAGGCTATGTTGTTGGTAATCCAACTTGTAANCAAGGTAGTTTTTNNNCAAGGATTTGC
TGCTTCAATTTTAATTNCCAATTTATAAANCAAATAAAAAANNCGNATTTAAAA
Length of 3' end seq. 654
Connected seq. ID CHP377P
Connected seq. 
>CHP377P.Seq
CTGTTGGCCTACTGGNATTCTCAAAAATAAATTAAATAACTTTTAAAACAAAAAATTTAA
ATAAATAAAATAAAAAAATTAAAAATAAAAAAATGATAAATATTGAAGATATTTCAAAAT
CTTCAAATCAAAGTGAAGAAAAACAATTAAAAAGTACAAGTTCAAAAACAAAATACCCAT
TCGCAGCAAAAAGTTTATTCAAAGGTTCAAATAATATTACACCATATTATTTATCAACCA
GTAATACATTCCAATGTGTAGCATCTGAGTCAATCCAAACATGGCTTCTTTCAGATGATG
GTCATATCTTTACATCCAGTGGTAATTTTGTTTTAGATGTTTCATCAGGTGGTTATTTTG
TTGAATTAGTACAACTTAATTCAAATTCAAAAACTCAAATTTGGACAATTGATACAACAA
ATAATAAAATTCAAAACCAAGGTAATGGTAAATACCTTGATATCGACAATTTGAATATTT
GTGTTGCACCTTTAAATGGAAACGCAACTCAAAAATGGACAACTTTTAGAAGGGCACCAA
TTCCAACTGGTAAT----------ATTATCAAATTTACTTTACACCAGCTGGTTACTATG
CACCAGTTTCAAGTGATGATTACTCTTATACTGATAGTACTGGAACCTATATTATGGCGG
AAATCGATAACTGTAACTCCCATCCTCCAAAAGCTTTAACCGATAAGTTATGGAATAATG
GAGTTTCAAAACAAGAAGTTTTCACATCTTCCTATGGTTGGAATTTAGCTACCTCTGTGA
CCTATTACAATATGGTCGGTAAATATAGTGGAATGTTTAAATTATCTTTCCCAACTGTAA
AGAATTTTACATCAGTACCAATGCAATTCGTAATGACCAATGGAAGTGATAGAGTTGGTA
CTTTCAATGTTAAAACTCATTTTGCTGGATTAGCCTCAACATATTACTATTCAGGTGCTC
TTGGTCATCATTATTACGATATTGCTGTAATTGATATTAACGGTAACAAGGTTGCAAATT
TCACAGTTGACAATAATTTGGAAGCTCTTGAAGGTAGTTATGTTTCAATTAAAACTAATT
CATTAGTTGTTCAACCAGGCTATGTTGTTGGTAATCCAACTTGTAANCAAGGTAGTTTTT
NNNCAAGGATTTGCTGCTTCAATTTTAATTNCCAATTTATAAANCAAATAAAAAANNCGN
ATTTAAAA
Length of connected seq. 1198
Full length Seq ID -
Full length Seq. -
Length of full length seq. -