>CHP350 (CHP350Q) /CSM/CH/CHP3-C/CHP350Q.Seq.d/
CACTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAAT
AAAAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCA
ACATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCA
GAAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAA
AAATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGAT
AATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGT
TTTAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCA
AATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGAT
TCTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCA
GTATTGGGAGATGCTGGTGCAACXXXXXXXXXXCATACAGTGTAGTATTGTTTGATGAAG
TTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTC
TTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAA
ATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTT
TATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGT
TTTTAAATCGTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGT
ATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTA
AAGACTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATNCTTTGG
TGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCAT
CCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCT
CAACTTTGATATTATAGATTTAAAACAACAACAACAACGGCCAGCTTNCTNCCAACCAAA
AAACAAAAAACTATTAAATAAAAAAAAA

hcwptgink**lkfayikxnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNP
EEFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAG
FKRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILS
VLGDAGA---

---YSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILG
EQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRR*ynclysie*rkps*yyyssikir
rkeirrskyvfkdfkrcfrfnyqcci*snxlvvdh*nvtlkrilslnlvnsslvvn*kki
kvllsmkkiiistlil*i*nnnnngqlxxnqktkny*ikk

Frame A:
hcwptgink**lkfayikxnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNP
EEFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAG
FKRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILS
VLGDAGA---

---htv*yclmklkklinkfgmfsykywmkvvlpmvkvep*isqmllsl*pqi*vvntsl
vnkqtkkvvttlyhklvkikslmklenisvqsf*ivddiivftplskenlhsiitlqlrs
vekrledqnmslktsndaldsiinaaydpxlww*tietlh*keych*t**thpww*ikrk
srcccq*krsssql*yyrfktttttasxlptkkqktik*kk

Frame B:
tvgllxlinnn*nlhi*kxikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliq
knllikqiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlv
lkdy*pnnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyq
ywemlvq---

---iqcsiv**s*kssstslecsltsig*rssyrwsr*nrrflkccyhydlkfr*sihpw
*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssmi*lsllh*vkktfivlllfn*dp
skrd*kikicl*rlqtml*iqlsmlhmiqxfggrplkryieknivtelsklilggklken
qgvvvnekdhhlnfdiidlkqqqqrpaxxqpknkkllnkkk

Frame C:
llaywx**iiikiciykxk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*sr
riy**nkynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf
*kiisqttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiis
igrcwcn---

---YSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILG
EQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRR*ynclysie*rkps*yyyssikir
rkeirrskyvfkdfkrcfrfnyqcci*snxlvvdh*nvtlkrilslnlvnsslvvn*kki
kvllsmkkiiistlil*i*nnnnngqlxxnqktkny*ikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP350 (CHP350Q) /CSM/CH/CHP3-C/CHP350Q.Seq.d/                       1966   0.0
SHF207 (SHF207Q) /CSM/SH/SHF2-A/SHF207Q.Seq.d/                       1176   0.0
CHP831 (CHP831Q) /CSM/CH/CHP8-B/CHP831Q.Seq.d/                       1176   0.0
CHP359 (CHP359Q) /CSM/CH/CHP3-C/CHP359Q.Seq.d/                       1170   0.0
VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1168   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1168   0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                       1168   0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/                       1168   0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/                       1168   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1168   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence.    72   2e-10  2
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome.    44   4e-08  33
AE017152|AE017152.1 Haemophilus ducreyi strain 35000HP section 2 of 6 of the complete genome.    50   6e-06  2
AC121792|AC121792.3 Mus musculus BAC clone RP23-404J7 from 3, complete sequence.    42   4e-05  8
BH156349|BH156349.1 ENTRL93TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   5e-05  2
AR632719|AR632719.1 Sequence 1 from patent US 6846651.             44   8e-05  2
AR274513|AR274513.1 Sequence 1 from patent US 6506581.             44   8e-05  2
BD426631|BD426631.1 The Nucleotide Sequence of the Haemophilus influenzae Rd Genome,Fragments Thereof, and Uses Thereof.    44   8e-05  2
U32767|U32767.1 Haemophilus influenzae Rd section 82 of 163 of the complete genome.    44   1e-04  2
CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    40   1e-04  29

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   117   9e-40
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...   109   9e-40
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   117   1e-39
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   117   1e-39
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   117   2e-39
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   115   3e-39
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   117   5e-39
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   117   5e-39
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote...   114   5e-39
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   117   5e-39

 psg: 0.63  gvh: 0.36  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHP350 is cyt

>CHP350F.Seq
CACTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAAT
AAAAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCA
ACATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCA
GAAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAA
AAATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGAT
AATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGT
TTTAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCA
AATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGAT
TCTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCA
GTATTGGGAGATGCTGGTGCAACNNNNNNNNNN

>CHP350Z.Seq
NNNNNNNNNNCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTT
TGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACC
GTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTT
GGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAA
GTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCGATGATATAAT
TGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATC
CGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGACTTCAAACGATGCTTTAGA
TTCAATTATCAATGCTGCATATGATCCAATNCTTTGGTGGTAGACCATTGAAACGTTACA
TTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAA
ATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAA
AACAACAACAACAACGGCCAGCTTNCTNCCAACCAAAAAACAAAAAACTATTAAATAAAA
AAAAA

>CHP350P.Seq
CACTGTTGGCCTACTGGNATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAAT
AAAAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCA
ACATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCA
GAAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAA
AAATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGAT
AATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGT
TTTAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCA
AATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGAT
TCTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCA
GTATTGGGAGATGCTGGTGCAAC----------CATACAGTGTAGTATTGTTTGATGAAG
TTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTC
TTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAA
ATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTT
TATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGT
TTTTAAATCGTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGT
ATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTA
AAGACTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATNCTTTGG
TGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCAT
CCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCT
CAACTTTGATATTATAGATTTAAAACAACAACAACAACGGCCAGCTTNCTNCCAACCAAA
AAACAAAAAACTATTAAATAAAAAAAAA