>CHP326 (CHP326Q) /CSM/CH/CHP3-B/CHP326Q.Seq.d/
XXXXXXXXXXAAATAATGGCGCTGCAGGCTGGAGCAAATAGTGGTGCCGCAAACTGATGC
AAATAGTGGTGCNGCNACTNCTGCAAATAAGTGGTGCCGCAGCTGGCTGCAAATAGAGGN
TCNCAATGCCGCTGCAACTGGTGCTGCNAATGGAAATAATGGCGCTGCAGCTGGAGCAAA
TAGTGGTNCCGCAANTGCTGCAAATAGTGGTGNTGCAAATAGTGGTGCTGCAACTGCTGC
AAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTGCAAATAGTGGCGC
TGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGT
AACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGCAGCAACCGCAGC
ATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAG

---*WRCRLEQIVVPQTDANSGAATXANKWCRSWLQIEXXNAAATGAANGNNGAAAGANS
GXAXAANSGXANSGAATAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVT
PNDQNVSPLSNSDAAATAASTTGRNPRNPTSR

Frame A:
---nngaagwsk*wcrklmqivvxxllqisgaaagck*rxxmplqlvlxmeimalqleqi
vvpqxlqivvxqivvlqllqivvlqleqivvlqllqivalqllqvvemvqvvlqtlvq**
lqmikmflhyrtlmlqqpqhqlqaetqeiqqve


Frame B:
---imalqagansgaan*ck*wcxxxck*vvpqlaanrgsqcrcnwccxwk*wrcswsk*
wxrxcck*wxck*wccncck*wccswsk*wccncck*wrcncckwwkwckwcckpwfnsn
sk*skcfsiiel*ccsnrsinyrqkpkksnk*


Frame C:
---*WRCRLEQIVVPQTDANSGAATXANKWCRSWLQIEXXNAAATGAANGNNGAAAGANS
GXAXAANSGXANSGAATAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVT
PNDQNVSPLSNSDAAATAASTTGRNPRNPTSR

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP326 (CHP326Q) /CSM/CH/CHP3-B/CHP326Q.Seq.d/                        841   0.0
SSD263 (SSD263Q) /CSM/SS/SSD2-C/SSD263Q.Seq.d/                        737   0.0
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                        737   0.0
SHL477 (SHL477Q) /CSM/SH/SHL4-D/SHL477Q.Seq.d/                        737   0.0
SHL166 (SHL166Q) /CSM/SH/SHL1-C/SHL166Q.Seq.d/                        737   0.0
SHL133 (SHL133Q) /CSM/SH/SHL1-B/SHL133Q.Seq.d/                        737   0.0
SHK260 (SHK260Q) /CSM/SH/SHK2-C/SHK260Q.Seq.d/                        737   0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/                        737   0.0
SHG352 (SHG352Q) /CSM/SH/SHG3-C/SHG352Q.Seq.d/                        737   0.0
SHD549 (SHD549Q) /CSM/SH/SHD5-C/SHD549Q.Seq.d/                        737   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CK783714|CK783714.1 UI-D-GC1-aau-c-07-0-UI.s1 UI-D-GC1 Alexandrium tamarense cDNA cloneUI-D-GC1-aau-c-07-0-UI 3', mRNA sequence.    30   0.002  3
DT338982|DT338982.1 JBW092C02.b_012.abi Pineapple week 5-10 nematode-infected gall cDNA library Ananas comosus cDNA clone JBW092C02 similar to undiscovered sequence, mRNA sequence.    30   0.002  3
AC141063|AC141063.1 Homo sapiens chromosome 16 clone RP11-1256C5, WORKING DRAFT SEQUENCE, 11 unordered pieces.    30   0.005  3
AC141261|AC141261.1 Homo sapiens chromosome 16 clone RP11-1335J10, WORKING DRAFT SEQUENCE, 4 unordered pieces.    28   0.019  3
AC167065|AC167065.1 Xenopus tropicalis clone ISB1-217D23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    28   0.021  3
CQ598205|CQ598205.1 Sequence 25963 from Patent WO0171042.          32   0.11   4
DQ013872|DQ013872.1 Ophiostoma novo-ulmi isolate V1 mating type 3' flanking region genomic sequence.    34   0.12   2
BJ576741|BJ576741.1 Ipomoea nil cDNA clone:jm40p11, 3' end, single read.    48   0.15   1
CJ765123|CJ765123.1 Ipomoea nil cDNA clone:jmsf35i02, 3' end.      48   0.15   1
AE003498|AE003498.5 Drosophila melanogaster chromosome X, section 50 of 74 of the complete sequence.    36   0.32   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    61   1e-08

 psg: 0.67  gvh: 0.43  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for CHP326 is cyt

>CHP326Z.Seq
NNNNNNNNNNAAATAATGGCGCTGCAGGCTGGAGCAAATAGTGGTGCCGCAAACTGATGC
AAATAGTGGTGCNGCNACTNCTGCAAATAAGTGGTGCCGCAGCTGGCTGCAAATAGAGGN
TCNCAATGCCGCTGCAACTGGTGCTGCNAATGGAAATAATGGCGCTGCAGCTGGAGCAAA
TAGTGGTNCCGCAANTGCTGCAAATAGTGGTGNTGCAAATAGTGGTGCTGCAACTGCTGC
AAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTGCAAATAGTGGCGC
TGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCCTGGTTCAATAGT
AACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGCAGCAACCGCAGC
ATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAG