CHP317
Library CH
(Link to library)
Clone ID CHP317
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11087-1
Original site URL
Representative seq. ID CHP317P
(Link to Original site)
Representative DNA sequence
>CHP317 (CHP317Q) /CSM/CH/CHP3-A/CHP317Q.Seq.d/
CTGTTGGCCTACTGGNATTCACAATTTATTTTTCTTCTTTAAAATTCTCTTTTTTTTTTT
ATTATGTCTTCAATTAAAATCAAAAGTATAACAATCAATCACTCAAACTATTTAATTANA
XXXXXXXXXXTTGGTTCAACTGCACCACCACAAACCAGTTCTTTCGGATTTGGAGGATTC
AGTAGTGCTCCAGTTTCAGCAACACCATCAGCAGCACCATCATTATTTGGTAGATTAGTT
AGTGCTCCAGTTTCAGCAACACCATCAGCAGTACCAACTGCCACTTCACAATTCGGTGGA
ACAACAAGTTTTAATGAAATTGAAACTCCAACTGGTACCCCTACCTCTTTTTCATTTGGT
GCTTCCACAACACCAAGTTCCTCAGGATTTGGGGGATTCGGTAGTGCTCCAGTCTCAACA
ACACCATCATTTGGTGCTATCCCTTCTTCCCCAGTTGAAAAAACAACAGCAACAACAACA
ACAACAGCAACTCCTCATTCAAATACAGAATCATCACTATTTGGAAGCACACAAGCCAAT
ATCACTTCATTGTTTGGTGGCTCGTCTACTCCACAACCATCCACATTCTCATTTTCAACA
CCACAATCAAAATTTGAAAATAATGATACCACTGATTATACTCCAACACCAACTGATAAT
ATTACTCTTACTTCAATTTCAGCAATGCCACAATTCTCAAATAATNCTGTTGAAGAAATC
AAACATGAACAAACAAAAAAAAAATTTGTAA
sequence update 2002.10.25
Translated Amino Acid sequence
llaywxsqfifll*NSLFFFIMSSIKIKSITINHSNYLIX---

---GSTAPPQTSSFGFGGFSSAPVSATPSAAPSLFGRLVSAPVSATPSAVPTATSQFGGT
TSFNEIETPTGTPTSFSFGASTTPSSSGFGGFGSAPVSTTPSFGAIPSSPVEKTTATTTT
TATPHSNTESSLFGSTQANITSLFGGSSTPQPSTFSFSTPQSKFENNDTTDYTPTPTDNI
TLTSISAMPQFSNNXVEEIKHEQTKKKFV


Translated Amino Acid sequence (All Frames)
Frame A:
llaywxsqfifll*NSLFFFIMSSIKIKSITINHSNYLIX---

---lvqlhhhkpvlsdledsvvlqfqqhhqqhhhylvd*lvlqfqqhhqqyqlplhnsve
qqvlmklklqlvplplfhlvlpqhqvpqdlgdsvvlqsqqhhhlvlsllpqlkkqqqqqq
qqqlliqiqnhhyleahkpislhclvarllhnhphshfqhhnqnlkimipliilqhqlii
llllqfqqchnsqixllkksnmnkqkknl*

Frame B:
cwptgihnlffffkilfffllclqlkskv*qsitqti*l---

---wfnctttnqffriwriq*cssfsntisstiiiw*is*cssfsntisstnchftirwn
nkf**n*nsnwypylffiwcfhntkflriwgir*csslnntiiwcypffps*knnsnnnn
nsnssfkyriitiwkhtsqyhfivwwlvysttihilifnttiki*k**yh*lysntn**y
ysyfnfsnatilk*xc*rnqt*tnkkkic

Frame C:
vgllxftiyfsslkfsfffyyvfn*nqkynnqslklfnx---

---GSTAPPQTSSFGFGGFSSAPVSATPSAAPSLFGRLVSAPVSATPSAVPTATSQFGGT
TSFNEIETPTGTPTSFSFGASTTPSSSGFGGFGSAPVSTTPSFGAIPSSPVEKTTATTTT
TATPHSNTESSLFGSTQANITSLFGGSSTPQPSTFSFSTPQSKFENNDTTDYTPTPTDNI
TLTSISAMPQFSNNXVEEIKHEQTKKKFV

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP317 (CHP317Q) /CSM/CH/CHP3-A/CHP317Q.Seq.d/ 777 0.0
VHQ347 (VHQ347Q) /CSM/VH/VHQ3-B/VHQ347Q.Seq.d/ 648 0.0
VHP347 (VHP347Q) /CSM/VH/VHP3-B/VHP347Q.Seq.d/ 648 0.0
VHP189 (VHP189Q) /CSM/VH/VHP1-D/VHP189Q.Seq.d/ 648 0.0
VHO875 (VHO875Q) /CSM/VH/VHO8-D/VHO875Q.Seq.d/ 648 0.0
VHO647 (VHO647Q) /CSM/VH/VHO6-B/VHO647Q.Seq.d/ 648 0.0
VHM633 (VHM633Q) /CSM/VH/VHM6-B/VHM633Q.Seq.d/ 648 0.0
VHL565 (VHL565Q) /CSM/VH/VHL5-C/VHL565Q.Seq.d/ 648 0.0
VHD645 (VHD645Q) /CSM/VH/VHD6-B/VHD645Q.Seq.d/ 648 0.0
VHC529 (VHC529Q) /CSM/VH/VHC5-B/VHC529Q.Seq.d/ 648 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 648 0.0 11
CK814498|CK814498.1 Rasgsc5080 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 46 5e-06 2
AF017777|AF017777.1 Drosophila melanogaster tweety (tty), flightless (fli), dodo (dod), penguin (pen), small optic lobes (sol), innocent bystander (iby), waclaw (waw), bobby sox (bbx), sluggish (slg), helicase (hlc), misato (mst), and la costa (lcs) genes, complete cds. 44 2e-05 2
CW867024|CW867024.1 she3f2-28.g_054.ab1 Whole-genome shotgun library of the elephant shark (aka elephant fish) Callorhinchus milii genomic, genomic survey sequence. 44 7e-05 2
AE003568|AE003568.4 Drosophila melanogaster chromosome X, section 71 of 74 of the complete sequence. 36 0.003 2
AC011251|AC011251.6 Drosophila melanogaster clone BACR09F10, complete sequence. 36 0.003 2
AC013978|AC013978.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 36 0.003 2
CQ574214|CQ574214.1 Sequence 1972 from Patent WO0171042. 36 0.003 2
AF184227|AF184227.1 Drosophila melanogaster clone LD23194 tty (tty) mRNA, complete cds. 36 0.003 2
CQ574215|CQ574215.1 Sequence 1973 from Patent WO0171042. 36 0.003 2
dna update 2005. 9.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116963_44(AC116963|pid:none) Dictyostelium discoideum chromoso... 181 2e-44
AB002342_1(AB002342|pid:none) Human mRNA for KIAA0344 gene, part... 35 1.8
EF598049_1(EF598049|pid:none) Arabidopsis thaliana ecotype CS671... 35 3.1
EF598042_1(EF598042|pid:none) Arabidopsis thaliana ecotype CS901... 35 3.1
EF598054_1(EF598054|pid:none) Arabidopsis thaliana ecotype CS679... 34 4.0
AY814858_1(AY814858|pid:none) Schistosoma japonicum SJCHGC05983 ... 34 4.0
AF206618_1(AF206618|pid:none) Gorilla gorilla carboxyl-ester lip... 34 5.3
AM502233_147(AM502233|pid:none) Leishmania infantum chromosome 15. 34 5.3
AM502233_146(AM502233|pid:none) Leishmania infantum chromosome 15. 34 5.3
CP000444_3921(CP000444|pid:none) Shewanella sp. MR-7, complete g... 33 6.9
protein update 2009. 4.10
PSORT

psg: 0.98 gvh: 0.62 alm: 0.37 top: 0.63 tms: 0.00 mit: 0.50 mip: 0.11
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: mitochondrial
16.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for CHP317 is mit

5' end seq. ID CHP317F
5' end seq.
>CHP317F.Seq
CTGTTGGCCTACTGGNATTCACAATTTATTTTTCTTCTTTAAAATTCTCTTTTTTTTTTT
ATTATGTCTTCAATTAAAATCAAAAGTATAACAATCAATCACTCAAACTATTTAATTANA
NNNNNNNNNN
Length of 5' end seq. 130
3' end seq. ID CHP317Z
3' end seq.
>CHP317Z.Seq
NNNNNNNNNNTTGGTTCAACTGCACCACCACAAACCAGTTCTTTCGGATTTGGAGGATTC
AGTAGTGCTCCAGTTTCAGCAACACCATCAGCAGCACCATCATTATTTGGTAGATTAGTT
AGTGCTCCAGTTTCAGCAACACCATCAGCAGTACCAACTGCCACTTCACAATTCGGTGGA
ACAACAAGTTTTAATGAAATTGAAACTCCAACTGGTACCCCTACCTCTTTTTCATTTGGT
GCTTCCACAACACCAAGTTCCTCAGGATTTGGGGGATTCGGTAGTGCTCCAGTCTCAACA
ACACCATCATTTGGTGCTATCCCTTCTTCCCCAGTTGAAAAAACAACAGCAACAACAACA
ACAACAGCAACTCCTCATTCAAATACAGAATCATCACTATTTGGAAGCACACAAGCCAAT
ATCACTTCATTGTTTGGTGGCTCGTCTACTCCACAACCATCCACATTCTCATTTTCAACA
CCACAATCAAAATTTGAAAATAATGATACCACTGATTATACTCCAACACCAACTGATAAT
ATTACTCTTACTTCAATTTCAGCAATGCCACAATTCTCAAATAATNCTGTTGAAGAAATC
AAACATGAACAAACAAAAAAAAAATTTGTAA
Length of 3' end seq. 631
Connected seq. ID CHP317P
Connected seq.
>CHP317P.Seq
CTGTTGGCCTACTGGNATTCACAATTTATTTTTCTTCTTTAAAATTCTCTTTTTTTTTTT
ATTATGTCTTCAATTAAAATCAAAAGTATAACAATCAATCACTCAAACTATTTAATTANA
----------TTGGTTCAACTGCACCACCACAAACCAGTTCTTTCGGATTTGGAGGATTC
AGTAGTGCTCCAGTTTCAGCAACACCATCAGCAGCACCATCATTATTTGGTAGATTAGTT
AGTGCTCCAGTTTCAGCAACACCATCAGCAGTACCAACTGCCACTTCACAATTCGGTGGA
ACAACAAGTTTTAATGAAATTGAAACTCCAACTGGTACCCCTACCTCTTTTTCATTTGGT
GCTTCCACAACACCAAGTTCCTCAGGATTTGGGGGATTCGGTAGTGCTCCAGTCTCAACA
ACACCATCATTTGGTGCTATCCCTTCTTCCCCAGTTGAAAAAACAACAGCAACAACAACA
ACAACAGCAACTCCTCATTCAAATACAGAATCATCACTATTTGGAAGCACACAAGCCAAT
ATCACTTCATTGTTTGGTGGCTCGTCTACTCCACAACCATCCACATTCTCATTTTCAACA
CCACAATCAAAATTTGAAAATAATGATACCACTGATTATACTCCAACACCAACTGATAAT
ATTACTCTTACTTCAATTTCAGCAATGCCACAATTCTCAAATAATNCTGTTGAAGAAATC
AAACATGAACAAACAAAAAAAAAATTTGTAA
Length of connected seq. 741
Full length Seq ID -
Full length Seq. -
Length of full length seq. -