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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP315
Library CH
(Link to library)
Clone ID CHP315
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13034-1
Original site URL
Representative seq. ID CHP315P
(Link to Original site)
Representative DNA sequence 
>CHP315 (CHP315Q) /CSM/CH/CHP3-A/CHP315Q.Seq.d/
ACTGTTGGCCTACTGGNATAATTCAAAATAAAATAAATATTCAAAATGCATAAAACATCA
GTTATCTTTTTGATTTCTCCAGCCTCTGAAGAAACCAACATTCAAGATGTTGAAAAGAAT
GTCAAAAACATTAAAATGGACGGTTTAACTTGGGGTGAATTCAGAAAGGAACCATTAGTT
GGTAAATTAGCTCGTCTTAGAGCATTGGCTGTTGTTGAAAACAAAACATCAGTTGATGAC
TTAGAAATGAAAATCAACAATATGGATTTAGTTCAAAGTGTTGATATTGAAGCAATGTCT
GAAATTTAAGAAAATTTAAATTTCTCATCCAATTAAAATAAAATTAAATTTAATTTGGAA
ATCATAAAAAAAAAAXXXXXXXXXXATAATTCAAAATAAAATAAATATTCAAAATGCATA
AAACATCAGTTATCTTTTTGATTTCTCCAGCCTCTGAAGAAACCAACATTCAAGATGTTG
AAAAGAATGTCAAAAACATTAAAATGGACGGTTTAACTTGGGGTGAATTCAGAAAGGAAC
CATTAGTTGGTAAATTAGCTCGTCTTAGAGCATTGGCTGTTGTTGAAAACAAAACATCAG
TTGATGACTTAGAAATGAAAATCAACAATATGGATTTAGTTCAAAGTGTTGATATTGAAG
CAATGTNCTGAAATTTAAGAAAATTTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllx*fkik*ifkmhktsviflispaseetniqdveknvknikmdgltwgefrkeplv
gklarlralavvenktsvddlemkinnmdlvqsvdieamsei*enlnfssn*NKIKFNLE
IIKKK---

---IIQNKINIQNA*nisylfdfssl*rnqhsrc*kecqkh*ngrfnlg*iqkgtisw*i
sss*sigcc*kqnis**lrnenqqygfsskc*y*snvlkfkki*
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllx*fkik*ifkmhktsviflispaseetniqdveknvknikmdgltwgefrkeplv
gklarlralavvenktsvddlemkinnmdlvqsvdieamsei*enlnfssn*NKIKFNLE
IIKKK---

---IIQNKINIQNA*nisylfdfssl*rnqhsrc*kecqkh*ngrfnlg*iqkgtisw*i
sss*sigcc*kqnis**lrnenqqygfsskc*y*snvlkfkki*

Frame B:
llaywxnsk*nkyskcikhqlsf*flqplkkptfkmlkrmsktlkwtv*lgvnsernh*l
vn*lvlehwlllktkhqlmt*k*kstiwi*fkvlilkqclkfkki*ishpikiklnliwk
s*kk---

---*fkik*ifkmhktsviflispaseetniqdveknvknikmdgltwgefrkeplvgkl
arlralavvenktsvddlemkinnmdlvqsvdieamx*nlrkf

Frame C:
cwptgiiqnkiniqna*nisylfdfssl*rnqhsrc*kecqkh*ngrfnlg*iqkgtisw
*isss*sigcc*kqnis**lrnenqqygfsskc*y*snv*nlrkfkfliqlk*n*i*fgn
hkkk---

---nsk*nkyskcikhqlsf*flqplkkptfkmlkrmsktlkwtv*lgvnsernh*lvn*
lvlehwlllktkhqlmt*k*kstiwi*fkvlilkqcxei*enl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP315 (CHP315Q) /CSM/CH/CHP3-A/CHP315Q.Seq.d/                        718   0.0
CHJ457 (CHJ457Q) /CSM/CH/CHJ4-C/CHJ457Q.Seq.d/                        690   0.0
CFK326 (CFK326Q) /CSM/CF/CFK3-B/CFK326Q.Seq.d/                        690   0.0
CHM879 (CHM879Q) /CSM/CH/CHM8-D/CHM879Q.Seq.d/                        686   0.0
CHH856 (CHH856Q) /CSM/CH/CHH8-C/CHH856Q.Seq.d/                        658   0.0
CHB133 (CHB133Q) /CSM/CH/CHB1-B/CHB133Q.Seq.d/                        480   e-134
CFC832 (CFC832Q) /CSM/CF/CFC8-B/CFC832Q.Seq.d/                        458   e-128
CFC632 (CFC632Q) /CSM/CF/CFC6-B/CFC632Q.Seq.d/                        438   e-122
SFE528 (SFE528Q) /CSM/SF/SFE5-B/SFE528Q.Seq.d/                         44   0.003
VFL378 (VFL378Q) /CSM/VF/VFL3-D/VFL378Q.Seq.d/                         42   0.011
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    42   8e-12  18
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            42   5e-10  18
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        36   2e-09  25
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         34   2e-09  15
CR762446|CR762446.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46   1e-08  14
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   3e-08  21
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   3e-08  13
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   3e-08  14
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   4e-08  16
AY149028|AY149028.1 Plasmodium chabaudi chabaudi strain AS clone YAC101, complete sequence.    46   6e-08  7
dna update 2005. 9.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ973180_1(AJ973180|pid:none) Strongylocentrotus purpuratus part...    70   4e-11
(P12262) RecName: Full=Elongation factor 1-beta;          Short=...    69   2e-10
EZ000417_1(EZ000417|pid:none) TSA: Culex tarsalis Ctar-253 elong...    68   2e-10
DQ673433_1(DQ673433|pid:none) Diaphorina citri putative elongati...    66   1e-09
AE013599_2501(AE013599|pid:none) Drosophila melanogaster chromos...    65   2e-09
AF172636_1(AF172636|pid:none) Drosophila melanogaster LD24492 fu...    65   2e-09
(Q9U2H9) RecName: Full=Probable elongation factor 1-beta/1-delta...    64   4e-09
AB180911_1(AB180911|pid:none) Antheraea yamamai EF-1 beta mRNA f...    63   7e-09
EU258621_1(EU258621|pid:none) Spodoptera exigua elongation facto...    62   1e-08
EF633904_1(EF633904|pid:none) Ornithodoros parkeri clone OP-323 ...    62   2e-08
protein update 2009. 4.10
PSORT 

 psg: 0.49  gvh: -0.02  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHP315 is nuc
5' end seq. ID CHP315F
5' end seq. 
>CHP315F.Seq
ACTGTTGGCCTACTGGNATAATTCAAAATAAAATAAATATTCAAAATGCATAAAACATCA
GTTATCTTTTTGATTTCTCCAGCCTCTGAAGAAACCAACATTCAAGATGTTGAAAAGAAT
GTCAAAAACATTAAAATGGACGGTTTAACTTGGGGTGAATTCAGAAAGGAACCATTAGTT
GGTAAATTAGCTCGTCTTAGAGCATTGGCTGTTGTTGAAAACAAAACATCAGTTGATGAC
TTAGAAATGAAAATCAACAATATGGATTTAGTTCAAAGTGTTGATATTGAAGCAATGTCT
GAAATTTAAGAAAATTTAAATTTCTCATCCAATTAAAATAAAATTAAATTTAATTTGGAA
ATCATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 385
3' end seq. ID CHP315Z
3' end seq. 
>CHP315Z.Seq
NNNNNNNNNNATAATTCAAAATAAAATAAATATTCAAAATGCATAAAACATCAGTTATCT
TTTTGATTTCTCCAGCCTCTGAAGAAACCAACATTCAAGATGTTGAAAAGAATGTCAAAA
ACATTAAAATGGACGGTTTAACTTGGGGTGAATTCAGAAAGGAACCATTAGTTGGTAAAT
TAGCTCGTCTTAGAGCATTGGCTGTTGTTGAAAACAAAACATCAGTTGATGACTTAGAAA
TGAAAATCAACAATATGGATTTAGTTCAAAGTGTTGATATTGAAGCAATGTNCTGAAATT
TAAGAAAATTTAA
Length of 3' end seq. 313
Connected seq. ID CHP315P
Connected seq. 
>CHP315P.Seq
ACTGTTGGCCTACTGGNATAATTCAAAATAAAATAAATATTCAAAATGCATAAAACATCA
GTTATCTTTTTGATTTCTCCAGCCTCTGAAGAAACCAACATTCAAGATGTTGAAAAGAAT
GTCAAAAACATTAAAATGGACGGTTTAACTTGGGGTGAATTCAGAAAGGAACCATTAGTT
GGTAAATTAGCTCGTCTTAGAGCATTGGCTGTTGTTGAAAACAAAACATCAGTTGATGAC
TTAGAAATGAAAATCAACAATATGGATTTAGTTCAAAGTGTTGATATTGAAGCAATGTCT
GAAATTTAAGAAAATTTAAATTTCTCATCCAATTAAAATAAAATTAAATTTAATTTGGAA
ATCATAAAAAAAAAA----------ATAATTCAAAATAAAATAAATATTCAAAATGCATA
AAACATCAGTTATCTTTTTGATTTCTCCAGCCTCTGAAGAAACCAACATTCAAGATGTTG
AAAAGAATGTCAAAAACATTAAAATGGACGGTTTAACTTGGGGTGAATTCAGAAAGGAAC
CATTAGTTGGTAAATTAGCTCGTCTTAGAGCATTGGCTGTTGTTGAAAACAAAACATCAG
TTGATGACTTAGAAATGAAAATCAACAATATGGATTTAGTTCAAAGTGTTGATATTGAAG
CAATGTNCTGAAATTTAAGAAAATTTAA
Length of connected seq. 678
Full length Seq ID -
Full length Seq. -
Length of full length seq. -