>CHP314 (CHP314Q) /CSM/CH/CHP3-A/CHP314Q.Seq.d/
CTGTTGGCCTACTGGCAAAAAATATAATTAACATCTAAAAATAAACCAAAAAAAAACAAT
TTTATTTATTAAGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAANNAAAAAAA
AAAAAAAAAAAAAATTTTTNNTTTTTTNAAANAAAAAXXXXXXXXXXTGGNATTTGTAAN
AANGCAACTGCAANTNAAAAAGGGACTTGNGAGTTTGTTGATTTCGATCCAAAACCNTTC
ATTTGTAAAANTGNTGCTGNTGTTTCANTTGGNGTTGCTGTTGGNGNTGCTGTTGGNGGG
GCNANTGCNCTTGGGGTTTTTATTTTTGNTGGTAAAAAAGGTTANGACTACTGGAAANCA
ANTCAAGG

cwptgkkyn*HLKINQKKTILFIKXKKKKKKKKKKKXXKKKKKKIFXFXKXK---

---GICXXATAXXKGTXEFVDFDPKPFICKXXAXVSXGVAVGXAVGGAXALGVFIFXGKK
GXDYWKXXQ

Frame A:
llaywqki*ltsknkpkknnfiy*xkkkkkkkkkkkexkkkkkknfxffxxk---

---wxl*xxncxxkrdlxvc*frsktxhl*xxcxcfxwxccwxccwxgxcxwgfyfxw*k
rlxllexxsr

Frame B:
cwptgkkyn*HLKINQKKTILFIKXKKKKKKKKKKKXXKKKKKKIFXFXKXK---

---GICXXATAXXKGTXEFVDFDPKPFICKXXAXVSXGVAVGXAVGGAXALGVFIFXGKK
GXDYWKXXQ

Frame C:
vgllakniini*k*tkkkqfyllxkkkkkkkkkkkrxkkkkkkkfxxfxxk---

---xfvxxqlqxkkglxsllisiqnxsfvkxxlxfxlxlllxxllxgxxxlgflflxvkk
vxttgxqxk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP314 (CHP314Q) /CSM/CH/CHP3-A/CHP314Q.Seq.d/                        268   5e-71
CHP218 (CHP218Q) /CSM/CH/CHP2-A/CHP218Q.Seq.d/                        232   3e-60
CHO316 (CHO316Q) /CSM/CH/CHO3-A/CHO316Q.Seq.d/                        232   3e-60
CHJ643 (CHJ643Q) /CSM/CH/CHJ6-B/CHJ643Q.Seq.d/                        226   2e-58
CHJ640 (CHJ640Q) /CSM/CH/CHJ6-B/CHJ640Q.Seq.d/                        226   2e-58
CHE806 (CHE806Q) /CSM/CH/CHE8-A/CHE806Q.Seq.d/                        226   2e-58
AHL193 (AHL193Q) /CSM/AH/AHL1-D/AHL193Q.Seq.d/                        226   2e-58
AHL158 (AHL158Q) /CSM/AH/AHL1-C/AHL158Q.Seq.d/                        226   2e-58
AHI740 (AHI740Q) /CSM/AH/AHI7-B/AHI740Q.Seq.d/                        226   2e-58
AHH119 (AHH119Q) /CSM/AH/AHH1-A/AHH119Q.Seq.d/                        226   2e-58

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ475989|CJ475989.1 Macaca fascicularis mRNA, clone: QorA-16361, 5' end, expressed in brain occipital lobe.    36   0.091  2
BD097384|BD097384.1 Nucleic acid sequences characterized by their enhanced expression in good prognostic human neuroblastoma upon comparison between good prognostic human neuroblastoma and poor prognostic human neuroblastoma.    48   0.12   1
BD083737|BD083737.1 Nucleic acid sequence characterized in that expression is potentiated in human neuroblastoma with good prognosis, in comparion between human neuroblastoma with good prognosis and human neuroblastoma with bad prognosis.    48   0.12   1
CJ483671|CJ483671.1 Macaca fascicularis mRNA, clone: QtsA-11172, 5' end, expressed in testis.    48   0.12   1
CJ443922|CJ443922.1 Macaca fascicularis mRNA, clone: QccE-21502, 5' end, expressed in cerebellum cortex.    32   0.44   3
AC104610|AC104610.13 Drosophila melanogaster 3L BAC RP98-35J16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    46   0.47   3
AC015440|AC015440.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    46   0.48   1
AC022105|AC022105.3 Homo sapiens chromosome 5 clone CTC-271N22, WORKING DRAFT SEQUENCE, 48 unordered pieces.    46   0.48   1
AE003440|AE003440.3 Drosophila melanogaster chromosome X, section 24 of 74 of the complete sequence.    46   0.48   1
AG239713|AG239713.1 Lotus japonicus DNA, clone:LjT05a14_sfi.    46   0.48   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    55   5e-07
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    52   5e-06
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    49   4e-05
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 47   3e-04
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 47   3e-04

 psg: 0.72  gvh: 0.43  alm: 0.30  top: 0.73  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 1.11  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.16  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: peroxisomal

>> prediction for CHP314 is nuc

>CHP314F.Seq
CTGTTGGCCTACTGGCAAAAAATATAATTAACATCTAAAAATAAACCAAAAAAAAACAAT
TTTATTTATTAAGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAANNAAAAAAA
AAAAAAAAAAAAAATTTTTNNTTTTTTNAAANAAAAANNNNNNNNNN

>CHP314Z.Seq
NNNNNNNNNNTGGNATTTGTAANAANGCAACTGCAANTNAAAAAGGGACTTGNGAGTTTG
TTGATTTCGATCCAAAACCNTTCATTTGTAAAANTGNTGCTGNTGTTTCANTTGGNGTTG
CTGTTGGNGNTGCTGTTGGNGGGGCNANTGCNCTTGGGGTTTTTATTTTTGNTGGTAAAA
AAGGTTANGACTACTGGAAANCAANTCAAGG

>CHP314P.Seq
CTGTTGGCCTACTGGCAAAAAATATAATTAACATCTAAAAATAAACCAAAAAAAAACAAT
TTTATTTATTAAGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAANNAAAAAAA
AAAAAAAAAAAAAATTTTTNNTTTTTTNAAANAAAAA----------TGGNATTTGTAAN
AANGCAACTGCAANTNAAAAAGGGACTTGNGAGTTTGTTGATTTCGATCCAAAACCNTTC
ATTTGTAAAANTGNTGCTGNTGTTTCANTTGGNGTTGCTGTTGGNGNTGCTGTTGGNGGG
GCNANTGCNCTTGGGGTTTTTATTTTTGNTGGTAAAAAAGGTTANGACTACTGGAAANCA
ANTCAAGG