>CHP289 (CHP289Q) /CSM/CH/CHP2-D/CHP289Q.Seq.d/
XXXXXXXXXXGATGATTTNCATTAAAAATTGCTTCNCCAATAANTTCATCAGACAGATTG
CTCATAACCTTGTGTAAAAAATAATAAAGCCTTTGACATTATTAATGGTGTCTTTAATAA
ACCTTCTCTATCTGGATCTTCACCTAAACTACTTAATAATGTCTTTACTGATGATTGCAT
TGTATTTAAAACTTCATGGNTATGGATTAATGGTTCTCTCTTCTTTCCAAAATCAACTAA
TTCCTTTGCCTTTTCCATTTGATCT

---dxh*kllxq*xhqtdcs*PCVKNNKAFDIINGVFNKPSLSGSSPKLLNNVFTDDCIV
FKTSWXWINGSLFFPKSTNSFAFSI*s

Frame A:
---mixikncfxnxfirqiahnlv*kiikpltllmvslinllyldlhlnylimsllmial
ylklhgyglmvlssfqnqliplpfpfd


Frame B:
---*fxlkiaspixssdrllitlckk**sl*hy*wcl**tfsiwift*tt**cly**lhc
i*nfmxmd*wfsllskin*flclfhli


Frame C:
---dxh*kllxq*xhqtdcs*PCVKNNKAFDIINGVFNKPSLSGSSPKLLNNVFTDDCIV
FKTSWXWINGSLFFPKSTNSFAFSI*s

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP289 (CHP289Q) /CSM/CH/CHP2-D/CHP289Q.Seq.d/                        482   e-135
VSJ860 (VSJ860Q) /CSM/VS/VSJ8-C/VSJ860Q.Seq.d/                        442   e-123
VSI845 (VSI845Q) /CSM/VS/VSI8-B/VSI845Q.Seq.d/                        442   e-123
VSH188 (VSH188Q) /CSM/VS/VSH1-D/VSH188Q.Seq.d/                        442   e-123
VSE818 (VSE818Q) /CSM/VS/VSE8-A/VSE818Q.Seq.d/                        442   e-123
SSD175 (SSD175Q) /CSM/SS/SSD1-D/SSD175Q.Seq.d/                        434   e-121
AHA126 (AHA126Q) /CSM/AH/AHA1-B/AHA126Q.Seq.d/                        434   e-121
VSH712 (VSH712Q) /CSM/VS/VSH7-A/VSH712Q.Seq.d/                        355   2e-97
VSC506 (VSC506Q) /CSM/VS/VSC5-A/VSC506Q.Seq.d/                        287   4e-77
VSA692 (VSA692Q) /CSM/VS/VSA6-D/VSA692Q.Seq.d/                        242   2e-63

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z49706|Z49706.1 D.discoideum mRNA for GTP cyclohydrolase I.       373   e-117  3
CR039620|CR039620.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN19n07.    44   0.055  2
AC110228|AC110228.1 Homo sapiens chromosome 18 clone RP11-146K18 map 18, LOW-PASS SEQUENCE SAMPLING.    38   0.083  2
AC152265|AC152265.3 Bos taurus clone CH240-4H21, *** SEQUENCING IN PROGRESS ***, 44 unordered pieces.    32   0.10   7
AC023795|AC023795.18 Homo sapiens 12 BAC RP11-242B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    34   0.10   6
BX511214|BX511214.8 Zebrafish DNA sequence from clone DKEY-191C11.    34   0.25   4
AC008820|AC008820.6 Homo sapiens chromosome 5 clone CTD-2127F10, complete sequence.    38   0.29   2
AC166650|AC166650.3 Mus musculus chromosome 5 clone RP23-434O9 map 5, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    34   0.36   3
AC096570|AC096570.1 Homo sapiens BAC clone RP11-368O18 from 2, complete sequence.    42   0.36   3
AE017197|AE017197.1 Rickettsia typhi str. Wilmington complete genome.    34   0.47   9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94465) RecName: Full=GTP cyclohydrolase 1;          EC=3.5.4.1...   127   3e-30
AF318067_1(AF318067|pid:none) Physarum polycephalum GTP cyclohyd...    61   1e-08
AF177164_1(AF177164|pid:none) Physarum polycephalum GTP cyclohyd...    61   1e-08
CP000951_2403(CP000951|pid:none) Synechococcus sp. PCC 7002, com...    60   3e-08
CU633446_54(CU633446|pid:none) Podospora anserina genomic DNA ch...    59   4e-08
(P51599) RecName: Full=GTP cyclohydrolase 1;          EC=3.5.4.1...    59   5e-08
AB220981_1(AB220981|pid:none) Papilio xuthus GTPCHI a mRNA for G...    59   7e-08
AM920436_1630(AM920436|pid:none) Penicillium chrysogenum Wiscons...    58   9e-08
AP007154_211(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    58   9e-08
CP000839_168(CP000839|pid:none) Acaryochloris marina MBIC11017 p...    57   1e-07

 psg: 0.70  gvh: 0.50  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for CHP289 is cyt

>CHP289Z.Seq
NNNNNNNNNNGATGATTTNCATTAAAAATTGCTTCNCCAATAANTTCATCAGACAGATTG
CTCATAACCTTGTGTAAAAAATAATAAAGCCTTTGACATTATTAATGGTGTCTTTAATAA
ACCTTCTCTATCTGGATCTTCACCTAAACTACTTAATAATGTCTTTACTGATGATTGCAT
TGTATTTAAAACTTCATGGNTATGGATTAATGGTTCTCTCTTCTTTCCAAAATCAACTAA
TTCCTTTGCCTTTTCCATTTGATCT