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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP286
Library CH
(Link to library)
Clone ID CHP286
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11282-1
Original site URL
Representative seq. ID CHP286P
(Link to Original site)
Representative DNA sequence 
>CHP286 (CHP286Q) /CSM/CH/CHP2-D/CHP286Q.Seq.d/
CTGTTGGCCTACTGGNAAAGTTATAGCAAATACTATAATAATAATAATTTAAATAAAGNA
TGAATCAAAATAGAACGGGTGGAGTATCAAAAGTTAAAAATAAATCGGCAGCACCAGTTC
AAATTACAGCAGAACAAATTTTAAGGGTAGCACATGAAAATCAACAAACTTTACCAAAAG
CACCACCAAAACAAGTTATAACGGACCAAGAAGAATTAGAAGATTATAGATTAAGAAAAA
GACAACAATATGAATCATTACTTGGTAGAAATCGAAAGACAGCAGCAATCTATATAAAAT
ATGCGGCATGGGAAGAATCACAAAAGGATTTAACACGTGCAAGATCAGTATTTGAACGTT
TCTTAGATATTGATCACCGTATTCCAACGGTTTGGATTAAATATGCAGAGATGGAAATGA
AAAATAAAAATATAAATTTAGCTAGAAATATTTAGGATAGAGCAGTTTGTTTATTACCAA
GAGTTTCACAACTTTGGTTTAAATATACTTTTATGGAAGATATGTTGGGTAATTATCCAG
CTGCTCGTGCAATCTTTGAACGTTGGATGCAATGGAAACCTGAACCACAAGCTTGGAATT
CTTATTTAAAATTTGAACAAAGATTAAAATTATTTGAAAATACAAGATTAATTTTTGAAA
AATATATAXXXXXXXXXXGTGTACGTACATTATATGAAAAGTATTTAGAAATTATGCCTG
ATAATTGTGATGCTTGGTGTAAATTTGCTCAATTGGAAACAGAGTTGGGCGAAACTGTTC
GTGCTAGAGCAATCTTTGAATTGGCAATTCAACAACCAAATTTAGATAGACCTGAAGTGG
TTTGGAAAGATTTTATAGATTCAGAAATTCAATTAAAACAATTTGATTTCGTTAAACAAT
TATATCGTAAATTATTAGAGAAAACTAATCATGTTAAAGTTTGGATTGGTTTCATTAAAT
TTGTACATTCAATAAAAGATAAACAACAACAAAAACAACGACAACAACAACAAGAGGAAG
ATGGTGATTCAAATACTACTAAAAAAGATGGTGGTGATGATGATAATAATGATGATATTA
ATAAACCAACTAGGGAAATTTTCATTGAAGCTCATAAATCATTATCAAACTCTGATAAAG
AGGAGAGATTATTATTATTGGAAAGTTGGAAAGAATTTGAACAAACATTTGGTAATCAAG
AAACTTTGAATCAAGTCCTTAAAAAGATTNCCACAAAGAGTTATCAAAAGAAGAAGTGAT
GGTAATGGTGGTATTGAAGAATATTTCGATTATATNCTTCCCCTGAAGAAGAAAAATCAA
CTCAAACCNCTTTGAAATTATTNAGAAGCTGNNCCAAAGCATGGNAAGAAATTAAAACAG
CAACAAGNAATTACAAAACACAACAGAATACAAAAACAACAACA
sequence update 2002.10.25
Translated Amino Acid sequence 
vgllxkl*qil****fk*xmnqnrtggvskvknksaapvqitaeqilrvahenqqtlpka
ppkqvitdqeeledyrlrkrqqyesllgrnrktaaiyikyaaweesqkdltrarsvferf
ldidhriptvwikyaememknkninlarni*DRAVCLLPRVSQLWFKYTFMEDMLGNYPA
ARAIFERWMQWKPEPQAWNSYLKFEQRLKLFENTRLIFEKYI---

---VRTLYEKYLEIMPDNCDAWCKFAQLETELGETVRARAIFELAIQQPNLDRPEVVWKD
FIDSEIQLKQFDFVKQLYRKLLEKTNHVKVWIGFIKFVHSIKDKQQQKQRQQQQEEDGDS
NTTKKDGGDDDNNDDINKPTREIFIEAHKSLSNSDKEERLLLLESWKEFEQTFGNQETLN
QVLKKIXTKSYQKKK*w*wwy*rifrlyxspeeekstqtxlklxrsxxkawxeiktatxn
yktqqntkttt
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxsyskyynnnnlnkx*ikierveyqklkinrqhqfklqqnkf*g*hmkinklyqk
hhqnkl*rtkkn*kiid*ekdnnmnhylveierqqqsi*nmrhgknhkri*hvqdqylnv
s*ilitvfqrfglnmqrwk*kiki*i*leifrieqfvyyqefhnfglnillwkicwviiq
llvqslnvgcngnlnhklgili*nlnkd*nylkiqd*flkni---

---vyvhymksi*klcliivmlgvnllnwkqswaklfvleqslnwqfnnqi*idlkwfgk
il*iqkfn*nnlislnnyivny*rklimlkfglvslnlyiq*kinnnknndnnnkrkmvi
qillkkmvvmmiimmilinqlgkfslklinhyqtlikrrdyyywkvgknlnkhlvikkl*
ikslkrxpqrvikrrsdgnggieeyfdyxlplkkknqlkpl*nyxeaxpkhgkklkqqqx
itkhnriqkqq

Frame B:
cwptgkviantiiiii*ikxesk*ngwsiks*k*igstssnysrtnfkgst*kstnftks
ttktsyngprrirrl*ikkktti*iitw*kskdssnlykicgmgritkgfntckisi*tf
lry*spysngld*icrdgnek*kykfs*kylg*sslfitksfttlv*iyfygryvg*lss
cscnl*tldamet*ttsleflfki*tkikii*kykinf*kiy---

---ctyii*kvfrnya**l*clv*icsignrvgrncsc*snl*ignsttkfr*t*sgler
fyrfrnsikti*fr*tiis*iiren*sc*sldwfh*ictfnkr*tttkttttttrgrw*f
kyy*krww*******y**tn*gnfh*ss*iiikl**rgeiiiigkleri*tniw*srnfe
ssp*kdxhkelskeevmvmvvlknisiixfp*rrkinsnxfeiixklxqsmxrn*nsnkx
lqntteyknnn

Frame C:
vgllxkl*qil****fk*xmnqnrtggvskvknksaapvqitaeqilrvahenqqtlpka
ppkqvitdqeeledyrlrkrqqyesllgrnrktaaiyikyaaweesqkdltrarsvferf
ldidhriptvwikyaememknkninlarni*DRAVCLLPRVSQLWFKYTFMEDMLGNYPA
ARAIFERWMQWKPEPQAWNSYLKFEQRLKLFENTRLIFEKYI---

---VRTLYEKYLEIMPDNCDAWCKFAQLETELGETVRARAIFELAIQQPNLDRPEVVWKD
FIDSEIQLKQFDFVKQLYRKLLEKTNHVKVWIGFIKFVHSIKDKQQQKQRQQQQEEDGDS
NTTKKDGGDDDNNDDINKPTREIFIEAHKSLSNSDKEERLLLLESWKEFEQTFGNQETLN
QVLKKIXTKSYQKKK*w*wwy*rifrlyxspeeekstqtxlklxrsxxkawxeiktatxn
yktqqntkttt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP286 (CHP286Q) /CSM/CH/CHP2-D/CHP286Q.Seq.d/                       1871   0.0
AHD712 (AHD712Q) /CSM/AH/AHD7-A/AHD712Q.Seq.d/                       1185   0.0
CHO254 (CHO254Q) /CSM/CH/CHO2-C/CHO254Q.Seq.d/                       1176   0.0
CHM107 (CHM107Q) /CSM/CH/CHM1-A/CHM107Q.Seq.d/                       1090   0.0
AFM301 (AFM301Q) /CSM/AF/AFM3-A/AFM301Q.Seq.d/                         52   2e-05
VSB716 (VSB716Q) /CSM/VS/VSB7-A/VSB716Q.Seq.d/                         46   0.001
SSM224 (SSM224Q) /CSM/SS/SSM2-A/SSM224Q.Seq.d/                         46   0.001
VHP674 (VHP674Q) /CSM/VH/VHP6-D/VHP674Q.Seq.d/                         44   0.006
VHL770 (VHL770Q) /CSM/VH/VHL7-C/VHL770Q.Seq.d/                         44   0.006
VHI601 (VHI601Q) /CSM/VH/VHI6-A/VHI601Q.Seq.d/                         44   0.006
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        36   1e-15  30
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    48   8e-14  16
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    44   1e-13  14
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence.    48   8e-13  19
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    38   8e-13  16
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.    52   1e-12  15
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    52   3e-12  14
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    44   5e-12  13
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    44   1e-11  18
CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    36   1e-11  32
dna update 2005. 9.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC166146_12(AC166146|pid:none) Medicago truncatula clone mth2-17...   259   2e-67
AF111802_1(AF111802|pid:none) Homo sapiens MSTP021 (MST021) mRNA...   258   3e-67
(Q9H8F8) RecName: Full=Crooked neck-like protein 1; AltName: Ful...   258   3e-67
AF318302_1(AF318302|pid:none) Homo sapiens CGI-201 protein, shor...   258   3e-67
BC044369_1(BC044369|pid:none) Danio rerio zgc:55327, mRNA (cDNA ...   257   6e-67
AM473521_1(AM473521|pid:none) Vitis vinifera contig VV78X003108....   256   2e-66
AM114763_1(AM114763|pid:none) Platynereis dumerilii mRNA for cro...   248   4e-64
AB016871_5(AB016871|pid:none) Arabidopsis thaliana genomic DNA, ...   244   4e-63
(P17886) RecName: Full=Protein crooked neck;  &AE014298_380(AE01...   238   3e-61
AC135428_1(AC135428|pid:none) Oryza sativa (japonica cultivar-gr...   236   1e-60
protein update 2009. 4.10
PSORT 

 psg: 0.73  gvh: 0.48  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHP286 is nuc
5' end seq. ID CHP286F
5' end seq. 
>CHP286F.Seq
CTGTTGGCCTACTGGNAAAGTTATAGCAAATACTATAATAATAATAATTTAAATAAAGNA
TGAATCAAAATAGAACGGGTGGAGTATCAAAAGTTAAAAATAAATCGGCAGCACCAGTTC
AAATTACAGCAGAACAAATTTTAAGGGTAGCACATGAAAATCAACAAACTTTACCAAAAG
CACCACCAAAACAAGTTATAACGGACCAAGAAGAATTAGAAGATTATAGATTAAGAAAAA
GACAACAATATGAATCATTACTTGGTAGAAATCGAAAGACAGCAGCAATCTATATAAAAT
ATGCGGCATGGGAAGAATCACAAAAGGATTTAACACGTGCAAGATCAGTATTTGAACGTT
TCTTAGATATTGATCACCGTATTCCAACGGTTTGGATTAAATATGCAGAGATGGAAATGA
AAAATAAAAATATAAATTTAGCTAGAAATATTTAGGATAGAGCAGTTTGTTTATTACCAA
GAGTTTCACAACTTTGGTTTAAATATACTTTTATGGAAGATATGTTGGGTAATTATCCAG
CTGCTCGTGCAATCTTTGAACGTTGGATGCAATGGAAACCTGAACCACAAGCTTGGAATT
CTTATTTAAAATTTGAACAAAGATTAAAATTATTTGAAAATACAAGATTAATTTTTGAAA
AATATATANNNNNNNNNN
Length of 5' end seq. 678
3' end seq. ID CHP286Z
3' end seq. 
>CHP286Z.Seq
NNNNNNNNNNGTGTACGTACATTATATGAAAAGTATTTAGAAATTATGCCTGATAATTGT
GATGCTTGGTGTAAATTTGCTCAATTGGAAACAGAGTTGGGCGAAACTGTTCGTGCTAGA
GCAATCTTTGAATTGGCAATTCAACAACCAAATTTAGATAGACCTGAAGTGGTTTGGAAA
GATTTTATAGATTCAGAAATTCAATTAAAACAATTTGATTTCGTTAAACAATTATATCGT
AAATTATTAGAGAAAACTAATCATGTTAAAGTTTGGATTGGTTTCATTAAATTTGTACAT
TCAATAAAAGATAAACAACAACAAAAACAACGACAACAACAACAAGAGGAAGATGGTGAT
TCAAATACTACTAAAAAAGATGGTGGTGATGATGATAATAATGATGATATTAATAAACCA
ACTAGGGAAATTTTCATTGAAGCTCATAAATCATTATCAAACTCTGATAAAGAGGAGAGA
TTATTATTATTGGAAAGTTGGAAAGAATTTGAACAAACATTTGGTAATCAAGAAACTTTG
AATCAAGTCCTTAAAAAGATTNCCACAAAGAGTTATCAAAAGAAGAAGTGATGGTAATGG
TGGTATTGAAGAATATTTCGATTATATNCTTCCCCTGAAGAAGAAAAATCAACTCAAACC
NCTTTGAAATTATTNAGAAGCTGNNCCAAAGCATGGNAAGAAATTAAAACAGCAACAAGN
AATTACAAAACACAACAGAATACAAAAACAACAACA
Length of 3' end seq. 756
Connected seq. ID CHP286P
Connected seq. 
>CHP286P.Seq
CTGTTGGCCTACTGGNAAAGTTATAGCAAATACTATAATAATAATAATTTAAATAAAGNA
TGAATCAAAATAGAACGGGTGGAGTATCAAAAGTTAAAAATAAATCGGCAGCACCAGTTC
AAATTACAGCAGAACAAATTTTAAGGGTAGCACATGAAAATCAACAAACTTTACCAAAAG
CACCACCAAAACAAGTTATAACGGACCAAGAAGAATTAGAAGATTATAGATTAAGAAAAA
GACAACAATATGAATCATTACTTGGTAGAAATCGAAAGACAGCAGCAATCTATATAAAAT
ATGCGGCATGGGAAGAATCACAAAAGGATTTAACACGTGCAAGATCAGTATTTGAACGTT
TCTTAGATATTGATCACCGTATTCCAACGGTTTGGATTAAATATGCAGAGATGGAAATGA
AAAATAAAAATATAAATTTAGCTAGAAATATTTAGGATAGAGCAGTTTGTTTATTACCAA
GAGTTTCACAACTTTGGTTTAAATATACTTTTATGGAAGATATGTTGGGTAATTATCCAG
CTGCTCGTGCAATCTTTGAACGTTGGATGCAATGGAAACCTGAACCACAAGCTTGGAATT
CTTATTTAAAATTTGAACAAAGATTAAAATTATTTGAAAATACAAGATTAATTTTTGAAA
AATATATA----------GTGTACGTACATTATATGAAAAGTATTTAGAAATTATGCCTG
ATAATTGTGATGCTTGGTGTAAATTTGCTCAATTGGAAACAGAGTTGGGCGAAACTGTTC
GTGCTAGAGCAATCTTTGAATTGGCAATTCAACAACCAAATTTAGATAGACCTGAAGTGG
TTTGGAAAGATTTTATAGATTCAGAAATTCAATTAAAACAATTTGATTTCGTTAAACAAT
TATATCGTAAATTATTAGAGAAAACTAATCATGTTAAAGTTTGGATTGGTTTCATTAAAT
TTGTACATTCAATAAAAGATAAACAACAACAAAAACAACGACAACAACAACAAGAGGAAG
ATGGTGATTCAAATACTACTAAAAAAGATGGTGGTGATGATGATAATAATGATGATATTA
ATAAACCAACTAGGGAAATTTTCATTGAAGCTCATAAATCATTATCAAACTCTGATAAAG
AGGAGAGATTATTATTATTGGAAAGTTGGAAAGAATTTGAACAAACATTTGGTAATCAAG
AAACTTTGAATCAAGTCCTTAAAAAGATTNCCACAAAGAGTTATCAAAAGAAGAAGTGAT
GGTAATGGTGGTATTGAAGAATATTTCGATTATATNCTTCCCCTGAAGAAGAAAAATCAA
CTCAAACCNCTTTGAAATTATTNAGAAGCTGNNCCAAAGCATGGNAAGAAATTAAAACAG
CAACAAGNAATTACAAAACACAACAGAATACAAAAACAACAACA
Length of connected seq. 1414
Full length Seq ID -
Full length Seq. -
Length of full length seq. -