CHP275
Library CH
(Link to library)
Clone ID CHP275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHP275P
(Link to Original site)
Representative DNA sequence
>CHP275 (CHP275Q) /CSM/CH/CHP2-D/CHP275Q.Seq.d/
ACTGTTGGCCTACTGGCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAA
TGTTGTTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAAT
GTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTAT
TCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTT
ACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCA
CCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTA
GTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGC
TCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCA
CCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGT
AGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGAAGX
XXXXXXXXXAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCAC
TGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCA
TGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGG
TTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAA
ACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAAC
CTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACA
ATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGA
ACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAG
TCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTA
TTATTGTGTAATTNCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATG
CTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTT
ATGTCACTNCTTTTACTNCTNCTGATGCTGGTGGTTATTATTT
sequence update 2002.10.25
Translated Amino Acid sequence
TVGLLASQVYDQRILALKGKCCLDSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRY
SSADGTFIYDGLTQRTTYEFTFTNPKDYYFETYEKTLACPPGVPCIRPTVSADNLAADLL
VANTFAYNIPLIKQVGVSSGSSILTVRISVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTG
SAVAGLLFTDINGNGIFDG---

---GKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTG
FDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQ
YRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNY
YCVIXCCILPSWFFHYNEKC*snsskyk**cflinc**clchxfyxx*cwwllf


Translated Amino Acid sequence (All Frames)
Frame A:
TVGLLASQVYDQRILALKGKCCLDSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRY
SSADGTFIYDGLTQRTTYEFTFTNPKDYYFETYEKTLACPPGVPCIRPTVSADNLAADLL
VANTFAYNIPLIKQVGVSSGSSILTVRISVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTG
SAVAGLLFTDINGNGIFDG---

---r*mw*scwcrs*skithws*iwsr*w*fl**s*nrss*lyqcfwcn*rws*yycynw
frll*si*rfnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ffsst
iscw*sla*ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*fqfkl
llcnxllhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlvvii

Frame B:
llaywhhkyminvfwh*kenvv*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvi
hllmvhlymmd*lnvqlmnlhlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*
lqiplpitfh*lnklvfhqahlylqlelvliwvmlsklnhqlnhllnhllnhqhlhhllv
vpslvyylpismvmeflme---

---GKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTG
FDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQ
YRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNY
YCVIXCCILPSWFFHYNEKC*snsskyk**cflinc**clchxfyxx*cwwllf

Frame C:
cwptgitsi*styfgikrkmlfrfk*kciv**r*triwkc*nffrkcn*l*gk*isntlf
ic*wyiyi*winstynl*iyiyqskrlll*nl*kdiglstrctmyssngfs**fgsrsfs
ckylcl*hsid*tswcfirliytys*n*c*fglc*ansttnsttysttysttntstiyw*
crrwfiiyryqw*wnf*wk---

---vnvvvllvpeliknhslvldmvqvmvisliiikqvfmtipmllvqlkvvvilllqlv
sitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhn
ivlvefgli*mvmvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlklisvqii
iv*xpvaffqagssitmrnadpthpntnsdaflstvdnvyvtxftxxdaggyy

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP275 (CHP275Q) /CSM/CH/CHP2-D/CHP275Q.Seq.d/ 2500 0.0
CHP345 (CHP345Q) /CSM/CH/CHP3-B/CHP345Q.Seq.d/ 1352 0.0
SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/ 1342 0.0
SSF392 (SSF392Q) /CSM/SS/SSF3-D/SSF392Q.Seq.d/ 1342 0.0
SHL880 (SHL880Q) /CSM/SH/SHL8-D/SHL880Q.Seq.d/ 1342 0.0
SHL845 (SHL845Q) /CSM/SH/SHL8-B/SHL845Q.Seq.d/ 1342 0.0
SHL833 (SHL833Q) /CSM/SH/SHL8-B/SHL833Q.Seq.d/ 1342 0.0
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/ 1342 0.0
SHL724 (SHL724Q) /CSM/SH/SHL7-A/SHL724Q.Seq.d/ 1342 0.0
SHL535 (SHL535Q) /CSM/SH/SHL5-B/SHL535Q.Seq.d/ 1342 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 62 3e-05 1
AF066073|AF066073.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds. 62 3e-05 1
AF066071|AF066071.1 Dictyostelium discoideum SP85 (pspB) gene, complete cds. 62 3e-05 2
CK808839|CK808839.1 Rasgsc1686 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 34 3e-05 4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 48 7e-05 17
CK808739|CK808739.1 Rasgsc1529 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 32 5e-04 4
S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt]. 58 5e-04 1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 58 5e-04 1
AF066072|AF066072.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds. 58 5e-04 2
CK808037|CK808037.1 Rasgsc0316 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 34 0.002 4
dna update 2005. 9.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 78 8e-13
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 59 4e-07
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 57 1e-06
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 53 3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 53 3e-05
(Q8NXX6) RecName: Full=Serine-aspartate repeat-containing protei... 53 3e-05
protein update 2009. 4.10
PSORT

psg: 0.75 gvh: 0.45 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHP275 is cyt

5' end seq. ID CHP275F
5' end seq.
>CHP275F.Seq
ACTGTTGGCCTACTGGCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAA
TGTTGTTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAAT
GTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTAT
TCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTT
ACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCA
CCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTA
GTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGC
TCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCA
CCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGT
AGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGAAGN
NNNNNNNNN
Length of 5' end seq. 609
3' end seq. ID CHP275Z
3' end seq.
>CHP275Z.Seq
NNNNNNNNNNAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCA
CTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTC
ATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTG
GTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTA
AACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAA
CCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCAC
AATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTG
AACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAA
GTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATT
ATTATTGTGTAATTNCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAAT
GCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTT
TATGTCACTNCTTTTACTNCTNCTGATGCTGGTGGTTATTATTT
Length of 3' end seq. 704
Connected seq. ID CHP275P
Connected seq.
>CHP275P.Seq
ACTGTTGGCCTACTGGCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAA
TGTTGTTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAAT
GTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTAT
TCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTT
ACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCA
CCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTA
GTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGC
TCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCA
CCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGT
AGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGAAG-
---------AGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCAC
TGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCA
TGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGG
TTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAA
ACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAAC
CTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACA
ATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGA
ACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAG
TCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTA
TTATTGTGTAATTNCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATG
CTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTT
ATGTCACTNCTTTTACTNCTNCTGATGCTGGTGGTTATTATTT
Length of connected seq. 1293
Full length Seq ID -
Full length Seq. -
Length of full length seq. -