>CHP268 (CHP268Q) /CSM/CH/CHP2-C/CHP268Q.Seq.d/
XXXXXXXXXXGATGATAAATAATNANATGTANCNGCTGGANTCCATGTTCAAACTNCAAC
TGGGNTGTTGTCACACCCCAATTTCCATGTGATGATAATAATCCCATGTACCGTAGATTC
CTGTTCAAATTCAACTGGTTGTTGTCACACTCCCAATCAATGTTGAATGATAATAATCCC
ATGTACCGAAGATAAAATGTACTCAATCCAGGGTGGTGTAACTCATACTCCAATTGGGAT
GTAATGATAATAATGCATGTACTGTAGATTCATGTTCAAATTNCAAACTGGGTTGTACTC
ATACACCAATGAAATGTGATGATAATAATNCCATGTACAATTGAACTCATGTTCAAATTC
AACTGGTTGTGTNCCATACCCCAAATGAATTGCGACGGATGGTAACTTNCTGTACTCTTG
ATTNCATGTTGTTCAACTGGTTGTACTCATACACCNAATTATTATTGNATGNACAATAA

---**IXXCXXWXPCSNXNWXVVTPQFPCDDNNPMYRRFLFKFNWLLSHSQSMLNDNNPM
YRR*nvlnpgwcnsysnwdvmiimhvl*ihvqixnwvvlihq*nvmiixpctielmfkfn
wlcxipqmncdgw*lxvllixccstgcthtpnyyxmxn

Frame A:
---minnxmxxlxsmfklqlgcchtpism****shvp*ipvqiqlvvvtlpinve***sh
vpkikctqsrvv*lilqlgcndnnactvdscsnxklgcthtpmkcddnnxmyn*thvqiq
lvvxhtpnelrrmvtxctldxmlfnwlysytxlllxxq*


Frame B:
---**IXXCXXWXPCSNXNWXVVTPQFPCDDNNPMYRRFLFKFNWLLSHSQSMLNDNNPM
YRR*nvlnpgwcnsysnwdvmiimhvl*ihvqixnwvvlihq*nvmiixpctielmfkfn
wlcxipqmncdgw*lxvllixccstgcthtpnyyxmxn


Frame C:
---dk*xxvxagxhvqtxtgxlshpnfhvmiiipctvdscsnstgcchtpnqc*miiipc
tedkmysiqggvthtpigm****cmycrfmfkxqtglysytnem****xhvqlnscsnst
gcvpypk*iatdgnxlys*xhvvqlvvlihxiiixxti

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP268 (CHP268Q) /CSM/CH/CHP2-C/CHP268Q.Seq.d/                        841   0.0
CHG408 (CHG408Q) /CSM/CH/CHG4-A/CHG408Q.Seq.d/                        496   e-139
SHL392 (SHL392Q) /CSM/SH/SHL3-D/SHL392Q.Seq.d/                        492   e-138
SHJ863 (SHJ863Q) /CSM/SH/SHJ8-C/SHJ863Q.Seq.d/                        492   e-138
SHJ687 (SHJ687Q) /CSM/SH/SHJ6-D/SHJ687Q.Seq.d/                        492   e-138
SHC883 (SHC883Q) /CSM/SH/SHC8-D/SHC883Q.Seq.d/                        492   e-138
CHL693 (CHL693Q) /CSM/CH/CHL6-D/CHL693Q.Seq.d/                        492   e-138
CHL417 (CHL417Q) /CSM/CH/CHL4-A/CHL417Q.Seq.d/                        492   e-138
CFG520 (CFG520Q) /CSM/CF/CFG5-A/CFG520Q.Seq.d/                        492   e-138
CHR658 (CHR658Q) /CSM/CH/CHR6-C/CHR658Q.Seq.d/                        486   e-136

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               50   5e-12  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.32   10
AC132036|AC132036.3 Rattus norvegicus clone CH230-210J5, *** SEQUENCING IN PROGRESS ***, 74 unordered pieces.    44   2.5    1
AC108662|AC108662.4 Rattus norvegicus clone CH230-260N19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   2.5    1
AF359981|AF359981.1 Penaeus (Litopenaeus) vannamei microsatellite TUMXLv10.28 sequence.    28   3.3    3
AL451076|AL451076.14 Mouse DNA sequence from clone RP23-43O20 on chromosome X.    32   4.5    2
AC110872|AC110872.4 Homo sapiens chromosome 3 clone RP11-154N11, WORKING DRAFT SEQUENCE, 17 unordered pieces.    36   7.9    3
AK107246|AK107246.1 Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F10, full insert sequence.    38   8.6    2
CF109204|CF109204.1 Shultzomica02455 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig211 5', mRNA sequence.    42   9.8    1
AC094950|AC094950.6 Rattus norvegicus 14 BAC CH230-6H12 (Children's Hospital Oakland Research Institute) complete sequence.    42   9.8    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    71   9e-17
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    71   2e-16
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    55   2e-14
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    50   2e-14
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    47   3e-10
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    48   5e-09
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 39   5e-06
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 35   0.011
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 32   0.019
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 40   0.035

 psg: 0.83  gvh: 0.57  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHP268 is cyt

>CHP268Z.Seq
NNNNNNNNNNGATGATAAATAATNANATGTANCNGCTGGANTCCATGTTCAAACTNCAAC
TGGGNTGTTGTCACACCCCAATTTCCATGTGATGATAATAATCCCATGTACCGTAGATTC
CTGTTCAAATTCAACTGGTTGTTGTCACACTCCCAATCAATGTTGAATGATAATAATCCC
ATGTACCGAAGATAAAATGTACTCAATCCAGGGTGGTGTAACTCATACTCCAATTGGGAT
GTAATGATAATAATGCATGTACTGTAGATTCATGTTCAAATTNCAAACTGGGTTGTACTC
ATACACCAATGAAATGTGATGATAATAATNCCATGTACAATTGAACTCATGTTCAAATTC
AACTGGTTGTGTNCCATACCCCAAATGAATTGCGACGGATGGTAACTTNCTGTACTCTTG
ATTNCATGTTGTTCAACTGGTTGTACTCATACACCNAATTATTATTGNATGNACAATAA