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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP261
Library CH
(Link to library)
Clone ID CHP261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHP261P
(Link to Original site)
Representative DNA sequence 
>CHP261 (CHP261Q) /CSM/CH/CHP2-C/CHP261Q.Seq.d/
CTGTTGGCCTACTGGNAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAA
ATATATAAAGATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAAT
TTTTTTTTTAATTCACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTC
ATCAATTGGTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCG
TGTTGAAATTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTAC
TGATACAGAACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAA
TACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAG
TGATATGAAACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCA
AGTTGAATTCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACT
CTTAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAAX
XXXXXXXXXCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTA
TGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAA
GAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTAT
CAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTC
GTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAG
ATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTG
TTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAA
CTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAA
AGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTA
AACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATG
ATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGATTTTTCAGAGGA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgnsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMS
SIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN
TVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEEISSMVL
LKMKETAEAYLGKTINNAV---

---DNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVS
AEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTV
KNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSK
LYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rifqr
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxfsssi*fiiiiiv*iykd*ffci*ifvnk*innnfffnshtyi*ilnn*ilknv
inwy*frynifmcwclak*sc*nyck*sr**nhsilcciy*yrtfnw*cckesscnesnq
ysi*c*tfnws*i**qrssk*yetlaiqsyskgw**atyss*iqr*n*sfltrrnlfngt
lknernr*slsw*nh**cc---

---liinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*my
qlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsl
lkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*v
nsikkevchkvvvcqvvcqmihqrvqttk*tn*idgffrg

Frame B:
cwptgnsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMS
SIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN
TVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEEISSMVL
LKMKETAEAYLGKTINNAV---

---**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkci
s*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc
*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*
tlsrrryatrwwyarwyvk*ftkefkqqsrrirltdfse

Frame C:
vgllxiq*fnliynnnnsini*rliflyinfck*ink**fff*fthihinik*lnikkch
qlvli*vqhihvlvfgkmivlkllqmikvieplhlmlhlliqnv*lvmlqriklq*iqpi
qylmlnv*lvvnlvtkkfkvi*nighsklfqrmvishifklnskvklkfshqkkslqwys
*k*kkplklilvkpliml*---

---DNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVS
AEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTV
KNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSK
LYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rifqr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP261 (CHP261Q) /CSM/CH/CHP2-C/CHP261Q.Seq.d/                       2183   0.0
CHP767 (CHP767Q) /CSM/CH/CHP7-C/CHP767Q.Seq.d/                       1291   0.0
CHP638 (CHP638Q) /CSM/CH/CHP6-B/CHP638Q.Seq.d/                       1291   0.0
CHP469 (CHP469Q) /CSM/CH/CHP4-C/CHP469Q.Seq.d/                       1291   0.0
CHP439 (CHP439Q) /CSM/CH/CHP4-B/CHP439Q.Seq.d/                       1291   0.0
CHP310 (CHP310Q) /CSM/CH/CHP3-A/CHP310Q.Seq.d/                       1291   0.0
CHP292 (CHP292Q) /CSM/CH/CHP2-D/CHP292Q.Seq.d/                       1291   0.0
CHP263 (CHP263Q) /CSM/CH/CHP2-C/CHP263Q.Seq.d/                       1291   0.0
CHP885 (CHP885Q) /CSM/CH/CHP8-D/CHP885Q.Seq.d/                       1289   0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                       1277   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1269   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1261   0.0    1
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   252   e-138  6
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   252   e-131  12
A58313|A58313.1 Sequence 1 from Patent WO9636707.                 133   2e-96  7
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70.   133   5e-96  7
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.   145   7e-96  9
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          133   4e-94  7
M84652|M84652.1 Entamoeba heat shock protein (Hsp70) mRNA, complete cds.   172   2e-91  8
DQ060426|DQ060426.1 Cryptosporidium andersoni strain zzca heat shock protein 70-like gene, partial sequence.   127   1e-85  8
dna update 2005. 9.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   352   2e-95
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   352   2e-95
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   266   1e-69
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   266   1e-69
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   257   5e-67
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   257   7e-67
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   256   1e-66
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   256   1e-66
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   255   2e-66
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   255   2e-66
protein update 2009. 4.10
PSORT 

 psg: 0.87  gvh: 0.35  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHP261 is cyt
5' end seq. ID CHP261F
5' end seq. 
>CHP261F.Seq
CTGTTGGCCTACTGGNAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAA
ATATATAAAGATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAAT
TTTTTTTTTAATTCACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTC
ATCAATTGGTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCG
TGTTGAAATTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTAC
TGATACAGAACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAA
TACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAG
TGATATGAAACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCA
AGTTGAATTCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACT
CTTAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAAN
NNNNNNNNN
Length of 5' end seq. 609
3' end seq. ID CHP261Z
3' end seq. 
>CHP261Z.Seq
NNNNNNNNNNCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCT
ATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCA
AGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTA
TCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGT
CGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAA
GATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACT
GTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCA
ACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAA
AAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGT
AAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAAT
GATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGATTTTTCAGAGG
A
Length of 3' end seq. 661
Connected seq. ID CHP261P
Connected seq. 
>CHP261P.Seq
CTGTTGGCCTACTGGNAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAA
ATATATAAAGATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAAT
TTTTTTTTTAATTCACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTC
ATCAATTGGTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCG
TGTTGAAATTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTAC
TGATACAGAACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAA
TACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAG
TGATATGAAACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCA
AGTTGAATTCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACT
CTTAAAAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAA-
---------CTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTA
TGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAA
GAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTAT
CAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTC
GTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAG
ATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTG
TTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAA
CTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAA
AGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTA
AACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATG
ATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGATTTTTCAGAGGA
Length of connected seq. 1250
Full length Seq ID -
Full length Seq. -
Length of full length seq. -