>CHP259 (CHP259Q) /CSM/CH/CHP2-C/CHP259Q.Seq.d/
CTGTTGGCCTACTGGGTAAATATATATAAAAACAAATAAATAAAAGGAGGAAATTATAAA
ATGAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCA
CAAAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTA
TATACAAATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAA
AGATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATT
ATTTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCA
TCTTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCA
GCAGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTG
ATTGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAAT
GCATCATCCAATGGTGATGTTTTATTCACACCXXXXXXXXXXCCTTGCGATGATTCCTCA
ATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAA
CCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGT
ACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGAT
AATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAA
TCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTAT
ATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCA
ACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGT
TGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCCTTGGTGGTTTTGGTTT
CTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAA
GGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATT
TGGTATTGAAGATGATGATGCNC

llaywvniyknk*IKGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPL
YTNKDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFP
SYGKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEDFGLTWNN
ASSNGDVLFT---

---PCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGY
ESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAA
TQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGPWWFWFLRF*esrfqtk
iikngwffkgrski*cyry*tklis***iwy*r**c

Frame A:
llaywvniyknk*IKGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPL
YTNKDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFP
SYGKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEDFGLTWNN
ASSNGDVLFT---

---PCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGY
ESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAA
TQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGPWWFWFLRF*esrfqtk
iikngwffkgrski*cyry*tklis***iwy*r**c

Frame B:
cwptg*iyiktnk*keeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhy
iqikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ish
lmekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*hgtm
hhpmvmfysh---

---lamipqcnliplvvf*vkkqliellnqipivi*pnkhkfqinivnvqskilnvilvt
kvqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslkkivhqvkpisnqkvseeslp
hnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll*lvlggfgfyvfknpdfkqk
llkmvgfskvgpkysvigikpnsladdefgieddda

Frame C:
vgllgkyi*kqinkrrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistii
yk*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpi
lwknpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**rfwfnmeqc
iiqw*cfiht---

---lr*flnailyhslyfr*knnl*nc*tkyqllydptstnfk*il*mysrrf*m*ywlr
kcrr*qfr**wfylwysiwifrtiels*incfticsnh*rklytrsnlyqikrfqksrch
tmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscfswslvvlvstflriqisnkn
y*kwlvfqrsvqnivlsvlnqth*lmmnlvlkmmmx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP259 (CHP259Q) /CSM/CH/CHP2-C/CHP259Q.Seq.d/                       2238   0.0
VHJ874 (VHJ874Q) /CSM/VH/VHJ8-D/VHJ874Q.Seq.d/                       1251   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                       1251   0.0
VHQ202 (VHQ202Q) /CSM/VH/VHQ2-A/VHQ202Q.Seq.d/                       1251   0.0
VHP781 (VHP781Q) /CSM/VH/VHP7-D/VHP781Q.Seq.d/                       1251   0.0
VHP738 (VHP738Q) /CSM/VH/VHP7-B/VHP738Q.Seq.d/                       1251   0.0
VHP639 (VHP639Q) /CSM/VH/VHP6-B/VHP639Q.Seq.d/                       1251   0.0
VHP137 (VHP137Q) /CSM/VH/VHP1-B/VHP137Q.Seq.d/                       1251   0.0
VHP112 (VHP112Q) /CSM/VH/VHP1-A/VHP112Q.Seq.d/                       1251   0.0
VHO888 (VHO888Q) /CSM/VH/VHO8-D/VHO888Q.Seq.d/                       1251   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING INPROGRESS ***, 4 unordered pieces.    32   2e-08  17
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   2e-06  23
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   4e-05  23
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   1e-04  12
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    30   2e-04  29
L35321|L35321.2 Dictyostelium discoideum class VII unconventional myosin (myoI) gene, complete cds.    32   4e-04  6
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    32   4e-04  14
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.001  17
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    36   0.001  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.001  19

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    79   3e-13
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    69   4e-10
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ...    69   4e-10
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c...    66   2e-09
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro...    65   4e-09
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ...    64   1e-08
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    62   3e-08
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor...    62   3e-08
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ...    62   3e-08
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor...    60   2e-07

 psg: 1.01  gvh: 0.69  alm: 0.28  top: 0.40  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for CHP259 is pla

>CHP259F.Seq
CTGTTGGCCTACTGGGTAAATATATATAAAAACAAATAAATAAAAGGAGGAAATTATAAA
ATGAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCA
CAAAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTA
TATACAAATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAA
AGATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATT
ATTTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCA
TCTTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCA
GCAGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTG
ATTGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAAT
GCATCATCCAATGGTGATGTTTTATTCACACCNNNNNNNNNN

>CHP259Z.Seq
NNNNNNNNNNCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGG
TGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGC
ACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTA
CGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGG
ATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGA
AGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGC
CACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATC
AAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGC
TTTAGCTGGTCCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAA
AATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTA
AACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCNC

>CHP259P.Seq
CTGTTGGCCTACTGGGTAAATATATATAAAAACAAATAAATAAAAGGAGGAAATTATAAA
ATGAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCA
CAAAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTA
TATACAAATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAA
AGATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATT
ATTTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCA
TCTTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCA
GCAGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTG
ATTGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAAT
GCATCATCCAATGGTGATGTTTTATTCACACC----------CCTTGCGATGATTCCTCA
ATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAA
CCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGT
ACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGAT
AATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAA
TCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTAT
ATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCA
ACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGT
TGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCCTTGGTGGTTTTGGTTT
CTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAA
GGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATT
TGGTATTGAAGATGATGATGCNC