>CHP254 (CHP254Q) /CSM/CH/CHP2-C/CHP254Q.Seq.d/
CTGTTGGCCTACTGGGNACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGC
TTTGGCCAATGCAAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAAC
CAATGCATCACAACAAAACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAA
TGAAGAGAGAGATGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCA
CTCTAAAAATAGCGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAA
TGCTAGAAACGTCATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGC
ACGTCACACTGTAGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAAT
GTGGGAAGAATTAATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAA
ACAATCTACTCTTCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTC
AAAATATTCAGATAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAATCACAAAA
TGTAAAATTAGCAGGTATTCAAGCATTATGCTTTGCATTAGAATTTGTAAAGAAXXXXXX
XXXX

cwptgx*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTN
EERDVQIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEA
RHTVAIVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMS
KYSDNVLRVITDGIKDESQNVKLAGIQALCFALEFVK---

Frame A:
llaywxli*htpvkngslssfgqckssi*kcsfrsriifnqcittklsiiyslinirtyk
*rerctnssisrycfke*ysl*k*rkk*nfn*tmgin*tkc*krh*kysftrfritki*s
tshcsycnftywsy*nsirnvgrinpsii*kh*kwfrry*tiyssntwlyl*rn*skcyv
kifr*ciksyyrwyqr*itkckisryssimlcirick---


Frame B:
cwptgx*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTN
EERDVQIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEA
RHTVAIVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMS
KYSDNVLRVITDGIKDESQNVKLAGIQALCFALEFVK---


Frame C:
vgllgtnitysskkwifiklwpmqiinlkvfvqkpnhf*pmhhnktfhylfth*h*nlqm
kremykfvn*qvlf*rivftlkiakemkf*lnnghqlnqmletslkilfykv*dhqnmkh
vtl*ll*fhvlvllkfhtqcgkn*sqhylktlkvvqkvlnnllfkhlvifvkkliqmlcq
niqimy*ellqmvskmnhkm*n*qvfkhyalh*nl*r---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP254 (CHP254Q) /CSM/CH/CHP2-C/CHP254Q.Seq.d/                       1291   0.0
AHM868 (AHM868Q) /CSM/AH/AHM8-C/AHM868Q.Seq.d/                       1267   0.0
VHP570 (VHP570Q) /CSM/VH/VHP5-C/VHP570Q.Seq.d/                       1263   0.0
VHL880 (VHL880Q) /CSM/VH/VHL8-D/VHL880Q.Seq.d/                       1263   0.0
VHL273 (VHL273Q) /CSM/VH/VHL2-D/VHL273Q.Seq.d/                       1263   0.0
VHH858 (VHH858Q) /CSM/VH/VHH8-C/VHH858Q.Seq.d/                       1263   0.0
VHG146 (VHG146Q) /CSM/VH/VHG1-B/VHG146Q.Seq.d/                       1263   0.0
VHC445 (VHC445Q) /CSM/VH/VHC4-B/VHC445Q.Seq.d/                       1263   0.0
VHB409 (VHB409Q) /CSM/VH/VHB4-A/VHB409Q.Seq.d/                       1263   0.0
SHI795 (SHI795Q) /CSM/SH/SHI7-D/SHI795Q.Seq.d/                       1263   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   4e-05  24
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    38   0.002  27
AC145915|AC145915.3 Gallus gallus chromosome UNK clone CH261-80C14, complete sequence.    34   0.006  11
AL358112|AL358112.20 Human DNA sequence from clone RP11-311B1 on chromosome 6.    44   0.013  5
BX571879|BX571879.8 Zebrafish DNA sequence from clone DKEY-238C7 in linkage group 18.    32   0.019  10
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    34   0.028  18
CR450769|CR450769.4 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone  DKEY-180J22.    32   0.036  10
AC041044|AC041044.3 Homo sapiens chromosome 12 clone RP11-288J4, WORKING DRAFT SEQUENCE, 14 unordered pieces.    42   0.043  8
AL139078|AL139078.2 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome;  segment 5/6.    34   0.053  11
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   0.077  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo...   129   7e-29
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin...   122   1e-26
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   122   1e-26
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl...   120   3e-26
PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C...   120   3e-26
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   120   3e-26
FM992688_205(FM992688|pid:none) Candida dubliniensis CD36 chromo...   115   8e-25
BX842622_14(BX842622|pid:none) Neurospora crassa DNA linkage gro...   115   1e-24
CR382135_96(CR382135|pid:none) Debaryomyces hansenii strain CBS7...   113   5e-24
AY303543_1(AY303543|pid:none) Emericella nidulans putative karyo...   112   9e-24

 psg: 0.76  gvh: 0.42  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for CHP254 is cyt

>CHP254F.Seq
CTGTTGGCCTACTGGGNACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGC
TTTGGCCAATGCAAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAAC
CAATGCATCACAACAAAACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAA
TGAAGAGAGAGATGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCA
CTCTAAAAATAGCGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAA
TGCTAGAAACGTCATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGC
ACGTCACACTGTAGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAAT
GTGGGAAGAATTAATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAA
ACAATCTACTCTTCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTC
AAAATATTCAGATAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAATCACAAAA
TGTAAAATTAGCAGGTATTCAAGCATTATGCTTTGCATTAGAATTTGTAAAGAANNNNNN
NNNN