CHP234
Library CH
(Link to library)
Clone ID CHP234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16426-1
Original site URL
Representative seq. ID CHP234P
(Link to Original site)
Representative DNA sequence
>CHP234 (CHP234Q) /CSM/CH/CHP2-B/CHP234Q.Seq.d/
TGTTGGCCTNACTGGNNTATAATAATAATAAAATAATAATAACCCATNAGTTTAATAATA
ATATATAGNAAAGNAAAGNAAAAAAAAGNAAAAAGNAAAAAAGNAAAAAAGNAAAAATTT
TTAAATAATAATATAAATTAAAAAAAAATAAAAAAAAAAATXXXXXXXXXXGTTTATCAT
TCCAAATGATCAATTATATTTTAATTGCTGCAGCTGGTTCATTTGGTGCAATTTTACGTA
TCGTTGGTTTAATTATTCAACTCATTAAATTGAAATGGTTAGCAAAAACAAAGAGACAAA
TCGATGATACCCTTCATCAAGGTCCATTTGCTTATGGTGTAAACTATGCAAAGAATCTTT
TAATCCTTCAATTGACTTTGGCTTACTCAACTCTATCACCTTTTATTTTAATATTTGGTG
CTTGGTATTTCGGTTTAAGTTATCTCGTTCAAAAGTATAACATCATTTGGGTAAATACTC
CTAATTATCAATGTGGTGGTTTCATGAGCCCAATGCATTTCAGACGTACGATCATTGGTT
TACTCATTTATCATATCCTTATGATTGGTACTTTCAATGTTTACAAATTCTACTATGGTA
TTTTGGTAGTCATCTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATATAAAT
TCAAGGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAANTGATGGTN
CCNATAGTGGTGATNNTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAGTACAA
GTTTAAATCCNACTGNACATCAAGAACTCCATGATGCTTCTCATTCAAT
sequence update 2002.10.25
Translated Amino Acid sequence
laxlxynnnkiiithxfnnni*xxkxkkxkkxkxkkxkifk**YKLKKNKKKN---

---LSFQMINYILIAAAGSFGAILRIVGLIIQLIKLKWLAKTKRQIDDTLHQGPFAYGVN
YAKNLLILQLTLAYSTLSPFILIFGAWYFGLSYLVQKYNIIWVNTPNYQCGGFMSPMHFR
RTIIGLLIYHILMIGTFNVYKFYYGILVVICLVVTIVFWYFAEYKFKDISKSGIMDQYQK
QQXDGXXSGDXEMKASGSSVINDSTSLNPTXHQELHDASHS


Translated Amino Acid sequence (All Frames)
Frame A:
cwpxwxiiiik***pxsliiiyxkxkxkkxkxkkxkkxkflnnnin*kkikkk---

---vyhsk*siif*llqlvhlvqfyvslv*lfnsln*ng*qkqrdksmipfikvhllmv*
tmqrif*sfn*lwltqlyhllf*ylvlgisv*visfksitsfg*illiinvvvs*aqcis
dvrslvysfiisl*lvlsmftnstmvfw*ssv*lllsyfgillninsrifqrvv*winik
nnkxmvpivvxxk*kplvvqlsmivqv*ixlxiknsmmlliq

Frame B:
vgltgx****nnnnpxv***yixkxxkkkxkxkkxkxknf*iii*ikkk*kkk---

---fiipndqlyfnccswfiwcnftyrwfnysth*iemvsknketnr*ypssrsiclwck
lckesfnpsidfgllnsitfyfniwclvfrfklsrskv*hhlgkys*lsmwwfhepnafq
tydhwfthlsypydwyfqclqillwyfgshlfscyyrilvfc*i*iqgyfkewyngsisk
ttx*wxx*w*x*neslw*fsyq**ykfksxxtsrtp*cfsfn

Frame C:
laxlxynnnkiiithxfnnni*xxkxkkxkkxkxkkxkifk**YKLKKNKKKN---

---LSFQMINYILIAAAGSFGAILRIVGLIIQLIKLKWLAKTKRQIDDTLHQGPFAYGVN
YAKNLLILQLTLAYSTLSPFILIFGAWYFGLSYLVQKYNIIWVNTPNYQCGGFMSPMHFR
RTIIGLLIYHILMIGTFNVYKFYYGILVVICLVVTIVFWYFAEYKFKDISKSGIMDQYQK
QQXDGXXSGDXEMKASGSSVINDSTSLNPTXHQELHDASHS

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP234 (CHP234Q) /CSM/CH/CHP2-B/CHP234Q.Seq.d/ 1263 0.0
CHI833 (CHI833Q) /CSM/CH/CHI8-B/CHI833Q.Seq.d/ 1255 0.0
CHE820 (CHE820Q) /CSM/CH/CHE8-A/CHE820Q.Seq.d/ 1255 0.0
CFC669 (CFC669Q) /CSM/CF/CFC6-C/CFC669Q.Seq.d/ 1255 0.0
AHN848 (AHN848Q) /CSM/AH/AHN8-B/AHN848Q.Seq.d/ 1255 0.0
AHD317 (AHD317Q) /CSM/AH/AHD3-A/AHD317Q.Seq.d/ 1255 0.0
AHA204 (AHA204Q) /CSM/AH/AHA2-A/AHA204Q.Seq.d/ 1255 0.0
AFG823 (AFG823Q) /CSM/AF/AFG8-A/AFG823Q.Seq.d/ 1255 0.0
CHL612 (CHL612Q) /CSM/CH/CHL6-A/CHL612Q.Seq.d/ 1249 0.0
AHK422 (AHK422Q) /CSM/AH/AHK4-A/AHK422Q.Seq.d/ 1249 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 1255 0.0 1
AF019983|AF019983.1 Dictyostelium discoideum R1062 gene, partial cds. 1217 0.0 1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 36 0.001 14
AC158216|AC158216.7 Mus musculus chromosome 7, clone RP24-167K8, complete sequence. 50 0.071 1
AC099719|AC099719.8 Mus musculus chromosome 7, clone RP23-394F19, complete sequence. 50 0.071 1
AC146929|AC146929.2 Papio anubis clone RP41-49M5, WORKING DRAFT SEQUENCE, 7 ordered pieces. 48 0.28 1
AC143177|AC143177.3 Macaca mulatta clone CH250-269F23, WORKING DRAFT SEQUENCE, 8 unordered pieces. 48 0.28 1
AC148556|AC148556.2 Callithrix jacchus clone CH259-60P13, WORKING DRAFT SEQUENCE, 5 ordered pieces. 48 0.28 1
AC160588|AC160588.2 Papio anubis clone RP41-265B24, WORKING DRAFT SEQUENCE, 7 ordered pieces. 48 0.28 1
AL732628|AL732628.18 Zebrafish DNA sequence from clone CH211-144F18 in linkage group 19. 46 0.57 3
dna update 2005. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116963_57(AC116963|pid:none) Dictyostelium discoideum chromoso... 405 e-111
AF019983_1(AF019983|pid:none) Dictyostelium discoideum R1062 gen... 392 e-108
AF448811_1(AF448811|pid:none) Davidia involucrata unknown gene. 94 7e-18
AC025295_7(AC025295|pid:none) Arabidopsis thaliana chromosome 1 ... 88 3e-16
AB039928_1(AB039928|pid:none) Arabidopsis thaliana mRNA for ERD4... 88 3e-16
AK221977_1(AK221977|pid:none) Arabidopsis thaliana mRNA for ERD4... 88 4e-16
EU186363_1(EU186363|pid:none) Brassica rapa clone S27 early-resp... 84 4e-15
CR380953_357(CR380953|pid:none) Candida glabrata strain CBS138 c... 73 1e-11
AE016820_257(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 70 6e-11
CR382124_759(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 69 1e-10
protein update 2009. 4.10
PSORT

psg: 0.92 gvh: 0.61 alm: 0.15 top: 0.67 tms: 0.27 mit: 0.31 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

40.0 %: plasma membrane
20.0 %: endoplasmic reticulum
12.0 %: mitochondrial
8.0 %: nuclear
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for CHP234 is pla

5' end seq. ID CHP234F
5' end seq.
>CHP234F.Seq
TGTTGGCCTNACTGGNNTATAATAATAATAAAATAATAATAACCCATNAGTTTAATAATA
ATATATAGNAAAGNAAAGNAAAAAAAAGNAAAAAGNAAAAAAGNAAAAAAGNAAAAATTT
TTAAATAATAATATAAATTAAAAAAAAATAAAAAAAAAAATNNNNNNNNNN
Length of 5' end seq. 171
3' end seq. ID CHP234Z
3' end seq.
>CHP234Z.Seq
NNNNNNNNNNGTTTATCATTCCAAATGATCAATTATATTTTAATTGCTGCAGCTGGTTCA
TTTGGTGCAATTTTACGTATCGTTGGTTTAATTATTCAACTCATTAAATTGAAATGGTTA
GCAAAAACAAAGAGACAAATCGATGATACCCTTCATCAAGGTCCATTTGCTTATGGTGTA
AACTATGCAAAGAATCTTTTAATCCTTCAATTGACTTTGGCTTACTCAACTCTATCACCT
TTTATTTTAATATTTGGTGCTTGGTATTTCGGTTTAAGTTATCTCGTTCAAAAGTATAAC
ATCATTTGGGTAAATACTCCTAATTATCAATGTGGTGGTTTCATGAGCCCAATGCATTTC
AGACGTACGATCATTGGTTTACTCATTTATCATATCCTTATGATTGGTACTTTCAATGTT
TACAAATTCTACTATGGTATTTTGGTAGTCATCTGTTTAGTTGTTACTATCGTATTTTGG
TATTTTGCTGAATATAAATTCAAGGATATTTCAAAGAGTGGTATAATGGATCAATATCAA
AAACAACAAANTGATGGTNCCNATAGTGGTGATNNTGAAATGAAAGCCTCTGGTAGTTCA
GTTATCAATGATAGTACAAGTTTAAATCCNACTGNACATCAAGAACTCCATGATGCTTCT
CATTCAAT
Length of 3' end seq. 668
Connected seq. ID CHP234P
Connected seq.
>CHP234P.Seq
TGTTGGCCTNACTGGNNTATAATAATAATAAAATAATAATAACCCATNAGTTTAATAATA
ATATATAGNAAAGNAAAGNAAAAAAAAGNAAAAAGNAAAAAAGNAAAAAAGNAAAAATTT
TTAAATAATAATATAAATTAAAAAAAAATAAAAAAAAAAAT----------GTTTATCAT
TCCAAATGATCAATTATATTTTAATTGCTGCAGCTGGTTCATTTGGTGCAATTTTACGTA
TCGTTGGTTTAATTATTCAACTCATTAAATTGAAATGGTTAGCAAAAACAAAGAGACAAA
TCGATGATACCCTTCATCAAGGTCCATTTGCTTATGGTGTAAACTATGCAAAGAATCTTT
TAATCCTTCAATTGACTTTGGCTTACTCAACTCTATCACCTTTTATTTTAATATTTGGTG
CTTGGTATTTCGGTTTAAGTTATCTCGTTCAAAAGTATAACATCATTTGGGTAAATACTC
CTAATTATCAATGTGGTGGTTTCATGAGCCCAATGCATTTCAGACGTACGATCATTGGTT
TACTCATTTATCATATCCTTATGATTGGTACTTTCAATGTTTACAAATTCTACTATGGTA
TTTTGGTAGTCATCTGTTTAGTTGTTACTATCGTATTTTGGTATTTTGCTGAATATAAAT
TCAAGGATATTTCAAAGAGTGGTATAATGGATCAATATCAAAAACAACAAANTGATGGTN
CCNATAGTGGTGATNNTGAAATGAAAGCCTCTGGTAGTTCAGTTATCAATGATAGTACAA
GTTTAAATCCNACTGNACATCAAGAACTCCATGATGCTTCTCATTCAAT
Length of connected seq. 819
Full length Seq ID -
Full length Seq. -
Length of full length seq. -