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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP230
Library CH
(Link to library)
Clone ID CHP230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1|Contig-U16524-1
Original site URL
Representative seq. ID CHP230P
(Link to Original site)
Representative DNA sequence 
>CHP230 (CHP230Q) /CSM/CH/CHP2-B/CHP230Q.Seq.d/
CTGTTGGCCTACTGGNAAAAACAACCATTTATTAATTTTTGTATGATTATTATAATTCAA
ATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATAATAATAAAAT
AAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAAATAAAAAAAAAAAAAAAAA
AAAAAANCCCAAAAAACCCNAAAAAAAAANCCCNTTAAAAAAAAAXXXXXXXXXXTGGTA
AATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACTGATAATGCTTGTG
TCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTG
CTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTA
ATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTG
GTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTC
AATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTA
AATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTA
TTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTG
CTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGT
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgknnhllifv*ll*fklkiyyiniykyilnknnnkinli**KIFLRKKKNKKKKKK
KXPKKPXKKXPLKK---

---GKCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTL
EGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCA
PDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAV
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxkqpfinfcmiiiiqiknilykyi*iyik*k***nkfniiknffekkkk*kkkkk
kkxqktxkkxpxkkk---

---w*mcssrfsl**w*smy**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlyl
grwl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*kmc
s****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswccc

Frame B:
cwptgknnhllifv*ll*fklkiyyiniykyilnknnnkinli**KIFLRKKKNKKKKKK
KXPKKPXKKXPLKK---

---GKCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTL
EGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCA
PDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAV

Frame C:
vgllxkttiy*flydyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkkikkkkkk
kxpknpkkkxx*kk---

---vnv*lkilivmmvihvlimlvslqlivppiaklvnalklqllnviwvinvwftvvpw
kvvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsiedvl
liivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ874 (CHQ874Q) /CSM/CH/CHQ8-D/CHQ874Q.Seq.d/                       1035   0.0
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                       1035   0.0
SHL665 (SHL665Q) /CSM/SH/SHL6-C/SHL665Q.Seq.d/                       1035   0.0
SHL654 (SHL654Q) /CSM/SH/SHL6-C/SHL654Q.Seq.d/                       1035   0.0
SHL544 (SHL544Q) /CSM/SH/SHL5-B/SHL544Q.Seq.d/                       1035   0.0
SHK812 (SHK812Q) /CSM/SH/SHK8-A/SHK812Q.Seq.d/                       1035   0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/                       1035   0.0
SHK126 (SHK126Q) /CSM/SH/SHK1-B/SHK126Q.Seq.d/                       1035   0.0
SHJ710 (SHJ710Q) /CSM/SH/SHJ7-A/SHJ710Q.Seq.d/                       1035   0.0
SHJ578 (SHJ578Q) /CSM/SH/SHJ5-D/SHJ578Q.Seq.d/                       1035   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42   5e-05  6
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.065  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.065  1
AL645667|AL645667.14 Mouse DNA sequence from clone RP23-316N16 on chromosome 13.    42   0.14   3
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    48   0.26   1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.32   10
AP005890|AP005890.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1029C06, WORKING DRAFT SEQUENCE, 1 ordered pieces.    46   1.0    1
CB648788|CB648788.1 ---.    46   1.0    1
AP005912|AP005912.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23.    46   1.0    1
dna update 2005. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                350   3e-95
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   155   1e-36
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   152   1e-35
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   142   1e-32
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                132   1e-29
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                113   7e-24
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 97   4e-19
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    73   1e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    68   3e-10
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    67   7e-10
protein update 2009. 4.10
PSORT 

 psg: 0.21  gvh: 0.50  alm: 0.21  top: 0.60  tms: 0.07  mit: 0.34  mip: 0.02
 nuc: 0.37  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHP230 is cyt
5' end seq. ID CHP230F
5' end seq. 
>CHP230F.Seq
CTGTTGGCCTACTGGNAAAAACAACCATTTATTAATTTTTGTATGATTATTATAATTCAA
ATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATAATAATAAAAT
AAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAAATAAAAAAAAAAAAAAAAA
AAAAAANCCCAAAAAACCCNAAAAAAAAANCCCNTTAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 235
3' end seq. ID CHP230Z
3' end seq. 
>CHP230Z.Seq
NNNNNNNNNNTGGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTA
CTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCA
CTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCT
TGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTG
GTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGT
ATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTG
CTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAA
ATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTG
CTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGT
Length of 3' end seq. 532
Connected seq. ID CHP230P
Connected seq. 
>CHP230P.Seq
CTGTTGGCCTACTGGNAAAAACAACCATTTATTAATTTTTGTATGATTATTATAATTCAA
ATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATAATAATAAAAT
AAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAAATAAAAAAAAAAAAAAAAA
AAAAAANCCCAAAAAACCCNAAAAAAAAANCCCNTTAAAAAAAAA----------TGGTA
AATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACTGATAATGCTTGTG
TCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACTCAAACTCCAACTG
CTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGTGGTTGTA
ATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGAACCTG
GTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGAAGCTC
AATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAATAGTA
AATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTA
TTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTG
CTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGT
Length of connected seq. 747
Full length Seq ID -
Full length Seq. -
Length of full length seq. -