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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP228
Library CH
(Link to library)
Clone ID CHP228
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16531-1
Original site URL
Representative seq. ID CHP228P
(Link to Original site)
Representative DNA sequence 
>CHP228 (CHP228Q) /CSM/CH/CHP2-B/CHP228Q.Seq.d/
CTGTTGGCCTACTGGGTTGCAATTTTAGNAAAAGGGTAGATTAATTTATTTTGGACCAGT
TGGTTTAGCAAAACAATACTTTCTTGATTTAGGATTTGATTGTGAACCACGTAAATCAAC
ACCTGATTTTTTAACTGGTGTAACTAATCCACAAGAACGTAAAGTACGTCCAGGTTTTGA
AGGTCGTGCACCAGAAACTTCATCAGATTTTGAAAAAGCTTGGAAATCTTCTGATCTCTA
TCAAGTTATGCTTCAACAACAATTGGAATATGAAAAAAAGATTGAATTGGAACAACCATC
AACTAATTTCATTGAACAAATTAGAAATGAAAATAGTAAAACCAATCCAACAAAATCAAT
TTATACAACATCTTATTTCACTCAAGTTAGGGCATTAATAGCAAGAAATTCTCAAATCAT
TTGGGGTGATAGATTTGCATTGATTTCAAAATATATTTCAATCATTGTTCAAACATTTGT
TTATGCTTCATTATTTTATAATATGAAATCTGATGTTACTGGTTTATTTAACAGAGGTGG
TGCAATTTATGCTGCAATTCTATTTAATGCTTTTGTAAGTGCTGGTGAATTAGGATTAAC
CTTTXXXXXXXXXXGGACAGCAGGTATTTATTACAATGGTGAATATGATTTTTATTTTTA
TATAACTTTCATCCTCTTCCTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTT
TTGTTTCAATGTTATGTTGGCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCT
TTTTTGTGGAGTACTCGTTCCTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCA
TTCAAATCCATGCCGTTATTTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTTTT
TGTTGATTGTTCAAATGAAGATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAA
AGAATATTTCAAGCCAACCTATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGA
ATGTGGTTATTGTGTTTTTAAATCAGGTGAAGAATATTATAAAACTNCTTGGTTGGTNCT
TATGAAAACCGTTTAAGAAACTATGGTATTTTATGGGCTTNCTTTATTTTCAACATAATN
ATGG
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptglqf*XKGRLIYFGPVGLAKQYFLDLGFDCEPRKSTPDFLTGVTNPQERKVRPGFE
GRAPETSSDFEKAWKSSDLYQVMLQQQLEYEKKIELEQPSTNFIEQIRNENSKTNPTKSI
YTTSYFTQVRALIARNSQIIWGDRFALISKYISIIVQTFVYASLFYNMKSDVTGLFNRGG
AIYAAILFNAFVSAGELGLTF---

---TAGIYYNGEYDFYFYITFILFLFICVSLGQVVSAFCFNVMLAQTILPLLLVMLFLFC
GVLVPYEQIPNFWKFVYHSNPCRYFLEGVVTSVLKNVFVDCSNEDLTKFSNPTNLTCKEY
FKPTYGNVRAVTKGDESECGYCVFKSGEEYYKTXWLVLMKTV*etmvfyglxlfst*xw
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywvailxkg*inlfwtswfsktils*fri*l*tt*int*ffnwcn*strt*stsrf*
rsctrnfirf*ksleif*slssyasttigi*kkd*igttin*fh*tn*k*k**nqsnkin
lynilfhss*ginskkfsnhlg**icidfkiyfnhcsniclcfiil*yei*cywfi*qrw
cnlccnsi*cfckcw*irinl---

---gqqvfitmvnmififi*lssssfsfvfhlvklylpfvsmlcwlkqfyhfy**cyfff
veysflmnkfqtfgnsfiiqihavis*kvl*hqf*rmfllivqmki*pnsqtqqi*pvkn
issqpmemfvllpkamkvnvvivflnqvkniikllgwxl*kpfkklwyfmgxlyfqhnx

Frame B:
cwptglqf*XKGRLIYFGPVGLAKQYFLDLGFDCEPRKSTPDFLTGVTNPQERKVRPGFE
GRAPETSSDFEKAWKSSDLYQVMLQQQLEYEKKIELEQPSTNFIEQIRNENSKTNPTKSI
YTTSYFTQVRALIARNSQIIWGDRFALISKYISIIVQTFVYASLFYNMKSDVTGLFNRGG
AIYAAILFNAFVSAGELGLTF---

---dsryllqw*i*flflynfhplpfhlcftwsscicllfqcyvgsnnfttfisnvisfl
wstrsl*tnsklleirlsfksmplflrrccnisfkecfc*lfk*rfnqilkpnkfnl*ri
fqanlwkcsccyqrr*k*mwllcf*ir*ril*nxlvgxyenrlrnygilwaxfifnixm

Frame C:
vgllgcnfxkrvd*fildqlv*qnntfli*dlivnhvnqhlif*lv*lihknvkyvqvlk
vvhqklhqilkklgnllisiklcfnnnwnmkkrlnwnnhqlislnklemkivkpiqqnqf
iqhlislklgh**qeilksfgvidlh*fqnifqslfkhlfmlhyfii*nlmllvyltevv
qfmlqfylmll*vlvn*d*p---

---TAGIYYNGEYDFYFYITFILFLFICVSLGQVVSAFCFNVMLAQTILPLLLVMLFLFC
GVLVPYEQIPNFWKFVYHSNPCRYFLEGVVTSVLKNVFVDCSNEDLTKFSNPTNLTCKEY
FKPTYGNVRAVTKGDESECGYCVFKSGEEYYKTXWLVLMKTV*etmvfyglxlfst*xw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP228 (CHP228Q) /CSM/CH/CHP2-B/CHP228Q.Seq.d/                       2137   0.0
VHE315 (VHE315Q) /CSM/VH/VHE3-A/VHE315Q.Seq.d/                       1074   0.0
VHO511 (VHO511Q) /CSM/VH/VHO5-A/VHO511Q.Seq.d/                       1051   0.0
VHO169 (VHO169Q) /CSM/VH/VHO1-C/VHO169Q.Seq.d/                       1007   0.0
VHQ177 (VHQ177Q) /CSM/VH/VHQ1-D/VHQ177Q.Seq.d/                       1003   0.0
VHP409 (VHP409Q) /CSM/VH/VHP4-A/VHP409Q.Seq.d/                       1003   0.0
VHO371 (VHO371Q) /CSM/VH/VHO3-C/VHO371Q.Seq.d/                       1003   0.0
VHN812 (VHN812Q) /CSM/VH/VHN8-A/VHN812Q.Seq.d/                       1003   0.0
VHN306 (VHN306Q) /CSM/VH/VHN3-A/VHN306Q.Seq.d/                       1003   0.0
VHM369 (VHM369Q) /CSM/VH/VHM3-C/VHM369Q.Seq.d/                       1003   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF482389|AF482389.1 Dictyostelium discoideum ABC transporter AbcG10 (abcG10) gene, complete cds.   545   0.0    7
AF482398|AF482398.1 Dictyostelium discoideum ABC transporter AbcG21 (abcG21) gene, complete cds.    94   1e-55  9
AF482396|AF482396.1 Dictyostelium discoideum ABC transporter AbcG19 (abcG19) gene, complete cds.    94   3e-48  9
AF482391|AF482391.1 Dictyostelium discoideum ABC transporter AbcG13 (abcG13) gene, complete cds.    94   4e-48  9
AF482388|AF482388.1 Dictyostelium discoideum ABC transporter AbcG9 (abcG9) gene, complete cds.   103   8e-47  10
AF482393|AF482393.1 Dictyostelium discoideum ABC transporter AbcG15 (abcG15) gene, complete cds.   107   2e-43  8
AF482390|AF482390.1 Dictyostelium discoideum ABC transporter AbcG11 (abcG11) gene, complete cds.    88   2e-42  8
AF482392|AF482392.1 Dictyostelium discoideum ABC transporter AbcG14 (abcG14) gene, complete cds.    96   1e-38  5
AF482395|AF482395.1 Dictyostelium discoideum ABC transporter AbcG17 (abcG17) gene, complete cds.   147   8e-35  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   147   6e-31  24
dna update 2005. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF482389_1(AF482389|pid:none) Dictyostelium discoideum ABC trans...   384   e-105
AF482390_1(AF482390|pid:none) Dictyostelium discoideum ABC trans...   271   3e-71
AF482391_1(AF482391|pid:none) Dictyostelium discoideum ABC trans...   265   2e-69
AF482396_1(AF482396|pid:none) Dictyostelium discoideum ABC trans...   265   2e-69
AF482393_1(AF482393|pid:none) Dictyostelium discoideum ABC trans...   249   2e-64
AF482395_1(AF482395|pid:none) Dictyostelium discoideum ABC trans...   231   3e-59
AJ309282_1(AJ309282|pid:none) Emericella nidulans atrG gene for ...   149   2e-34
AM269983_4(AM269983|pid:none) Aspergillus niger contig An01c0360...   147   6e-34
CR382133_160(CR382133|pid:none) Debaryomyces hansenii strain CBS...   146   1e-33
AM920435_1226(AM920435|pid:none) Penicillium chrysogenum Wiscons...   145   2e-33
protein update 2009. 4.10
PSORT 

 psg: 0.89  gvh: 0.35  alm: 0.13  top: 0.70  tms: 0.13  mit: 0.22  mip: 0.02
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHP228 is end
5' end seq. ID CHP228F
5' end seq. 
>CHP228F.Seq
CTGTTGGCCTACTGGGTTGCAATTTTAGNAAAAGGGTAGATTAATTTATTTTGGACCAGT
TGGTTTAGCAAAACAATACTTTCTTGATTTAGGATTTGATTGTGAACCACGTAAATCAAC
ACCTGATTTTTTAACTGGTGTAACTAATCCACAAGAACGTAAAGTACGTCCAGGTTTTGA
AGGTCGTGCACCAGAAACTTCATCAGATTTTGAAAAAGCTTGGAAATCTTCTGATCTCTA
TCAAGTTATGCTTCAACAACAATTGGAATATGAAAAAAAGATTGAATTGGAACAACCATC
AACTAATTTCATTGAACAAATTAGAAATGAAAATAGTAAAACCAATCCAACAAAATCAAT
TTATACAACATCTTATTTCACTCAAGTTAGGGCATTAATAGCAAGAAATTCTCAAATCAT
TTGGGGTGATAGATTTGCATTGATTTCAAAATATATTTCAATCATTGTTCAAACATTTGT
TTATGCTTCATTATTTTATAATATGAAATCTGATGTTACTGGTTTATTTAACAGAGGTGG
TGCAATTTATGCTGCAATTCTATTTAATGCTTTTGTAAGTGCTGGTGAATTAGGATTAAC
CTTTNNNNNNNNNN
Length of 5' end seq. 614
3' end seq. ID CHP228Z
3' end seq. 
>CHP228Z.Seq
NNNNNNNNNNGGACAGCAGGTATTTATTACAATGGTGAATATGATTTTTATTTTTATATA
ACTTTCATCCTCTTCCTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTTTTGT
TTCAATGTTATGTTGGCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCTTTTT
TGTGGAGTACTCGTTCCTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCATTCA
AATCCATGCCGTTATTTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTTTTTGTT
GATTGTTCAAATGAAGATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAAAGAA
TATTTCAAGCCAACCTATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGAATGT
GGTTATTGTGTTTTTAAATCAGGTGAAGAATATTATAAAACTNCTTGGTTGGTNCTTATG
AAAACCGTTTAAGAAACTATGGTATTTTATGGGCTTNCTTTATTTTCAACATAATNATGG
Length of 3' end seq. 540
Connected seq. ID CHP228P
Connected seq. 
>CHP228P.Seq
CTGTTGGCCTACTGGGTTGCAATTTTAGNAAAAGGGTAGATTAATTTATTTTGGACCAGT
TGGTTTAGCAAAACAATACTTTCTTGATTTAGGATTTGATTGTGAACCACGTAAATCAAC
ACCTGATTTTTTAACTGGTGTAACTAATCCACAAGAACGTAAAGTACGTCCAGGTTTTGA
AGGTCGTGCACCAGAAACTTCATCAGATTTTGAAAAAGCTTGGAAATCTTCTGATCTCTA
TCAAGTTATGCTTCAACAACAATTGGAATATGAAAAAAAGATTGAATTGGAACAACCATC
AACTAATTTCATTGAACAAATTAGAAATGAAAATAGTAAAACCAATCCAACAAAATCAAT
TTATACAACATCTTATTTCACTCAAGTTAGGGCATTAATAGCAAGAAATTCTCAAATCAT
TTGGGGTGATAGATTTGCATTGATTTCAAAATATATTTCAATCATTGTTCAAACATTTGT
TTATGCTTCATTATTTTATAATATGAAATCTGATGTTACTGGTTTATTTAACAGAGGTGG
TGCAATTTATGCTGCAATTCTATTTAATGCTTTTGTAAGTGCTGGTGAATTAGGATTAAC
CTTT----------GGACAGCAGGTATTTATTACAATGGTGAATATGATTTTTATTTTTA
TATAACTTTCATCCTCTTCCTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTT
TTGTTTCAATGTTATGTTGGCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCT
TTTTTGTGGAGTACTCGTTCCTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCA
TTCAAATCCATGCCGTTATTTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTTTT
TGTTGATTGTTCAAATGAAGATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAA
AGAATATTTCAAGCCAACCTATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGA
ATGTGGTTATTGTGTTTTTAAATCAGGTGAAGAATATTATAAAACTNCTTGGTTGGTNCT
TATGAAAACCGTTTAAGAAACTATGGTATTTTATGGGCTTNCTTTATTTTCAACATAATN
ATGG
Length of connected seq. 1134
Full length Seq ID -
Full length Seq. -
Length of full length seq. -