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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP211
Library CH
(Link to library)
Clone ID CHP211
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1|Contig-U16524-1
Original site URL
Representative seq. ID CHP211P
(Link to Original site)
Representative DNA sequence 
>CHP211 (CHP211Q) /CSM/CH/CHP2-A/CHP211Q.Seq.d/
CTGTTGGCCTACTGGNATGATTATTATAATTCAAATTAAAAATATATTATATAAATATAT
ATAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTT
TGAGAAAAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAA
AAAAANCCCNTTAAAAAAAAAXXXXXXXXXXCTTCAGCTAATAGTACCGCCAATAGCCAA
GTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTT
TACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGT
GCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGT
TCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTC
GATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACT
GCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTT
TGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCT
GTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgmiiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKKKKKKKNPKKXXK
KXPLKK---

---SANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCE
PGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGK
CISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAAIFAGKKG
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxdyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkkx*kkkkkkkpxkxxk
kxpxkkk---

---lqlivppiaklvnalklqllnviwvinvwftvvpwkvvvmqlnvfvqtlvlvklviv
nlvsvvn*riefvlpigivlklnvmqnmvafnsiedvlliivnvkkvsv*tillsvkmme
nvflkimiqnhlfvkkll*fqllllqvll*lvllf*vllylrvrkv

Frame B:
cwptgmiiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKKXKKKKKKKNPKKXXK
KXPLKK---

---fs**yrq*pswsmhsnsnc*m*fg**myglqlylgrwl*cnstclsklwcl*nwll*
twfrl*ikg*slffrlvly*ssm*ckiwlhsir*kmcs****msrrclckqycyr*k*wk
myf*rl*skticlskscfsfnccyckcccswcccfrccyicg*erl

Frame C:
vgllx*ll*fklkiyyiniykyilnknnnkinli**kiflrkkkkxkkkkkkktxkxpkk
kxx*kk---

---SANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLEGGCNATQRVCPNSGACKIGYCE
PGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAPDNSKCQEGVCVNNTAIGKNDGK
CISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAAIFAGKKG
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                        971   0.0
SHL876 (SHL876Q) /CSM/SH/SHL8-D/SHL876Q.Seq.d/                        971   0.0
SHL161 (SHL161Q) /CSM/SH/SHL1-C/SHL161Q.Seq.d/                        971   0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/                        971   0.0
SHG518 (SHG518Q) /CSM/SH/SHG5-A/SHG518Q.Seq.d/                        971   0.0
SHG357 (SHG357Q) /CSM/SH/SHG3-C/SHG357Q.Seq.d/                        971   0.0
SHG146 (SHG146Q) /CSM/SH/SHG1-B/SHG146Q.Seq.d/                        971   0.0
SHG135 (SHG135Q) /CSM/SH/SHG1-B/SHG135Q.Seq.d/                        971   0.0
SHF677 (SHF677Q) /CSM/SH/SHF6-D/SHF677Q.Seq.d/                        971   0.0
SHF156 (SHF156Q) /CSM/SH/SHF1-C/SHF156Q.Seq.d/                        971   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.060  1
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.060  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.060  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.060  1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          46   0.25   2
AL287678|AL287678.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 105D19 of library G from Tetraodon nigroviridis.    38   0.76   2
AP008215|AP008215.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9.    46   0.93   1
AC102643|AC102643.9 Mus musculus chromosome 8, clone RP23-304B22, complete sequence.    46   0.93   1
AC165814|AC165814.1 Bos taurus clone CH240-158L1, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    46   0.93   1
dna update 2005. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                297   2e-79
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   138   1e-31
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   130   3e-29
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   121   2e-26
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                116   7e-25
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 97   4e-19
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 87   5e-16
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    59   2e-07
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    55   3e-06
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    54   4e-06
protein update 2009. 4.10
PSORT 

 psg: 0.12  gvh: 0.34  alm: 0.16  top: 0.73  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.26  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHP211 is cyt
5' end seq. ID CHP211F
5' end seq. 
>CHP211F.Seq
CTGTTGGCCTACTGGNATGATTATTATAATTCAAATTAAAAATATATTATATAAATATAT
ATAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTT
TGAGAAAAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAA
AAAAANCCCNTTAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 211
3' end seq. ID CHP211Z
3' end seq. 
>CHP211Z.Seq
NNNNNNNNNNCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACTCAAACT
CCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGT
GGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGT
GAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATT
GAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGAT
AATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAATGATGGA
AAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTT
TCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATA
TTTGCGGGTAAGAAAGGTTA
Length of 3' end seq. 500
Connected seq. ID CHP211P
Connected seq. 
>CHP211P.Seq
CTGTTGGCCTACTGGNATGATTATTATAATTCAAATTAAAAATATATTATATAAATATAT
ATAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAATTTTTT
TGAGAAAAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAANCCNAAAA
AAAAANCCCNTTAAAAAAAAA----------CTTCAGCTAATAGTACCGCCAATAGCCAA
GTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTT
TACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGT
GCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGT
TCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTC
GATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACT
GCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTT
TGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCT
GTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTA
Length of connected seq. 691
Full length Seq ID -
Full length Seq. -
Length of full length seq. -