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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP208
Library CH
(Link to library)
Clone ID CHP208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID CHP208P
(Link to Original site)
Representative DNA sequence 
>CHP208 (CHP208Q) /CSM/CH/CHP2-A/CHP208Q.Seq.d/
CTGTTGGCCTACTGGNATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTC
TCTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATC
ATTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGG
ATATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATT
AATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGA
ACCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACA
TTGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGT
ATGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGT
ATATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGA
TATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTXXXXXXXXXXTACAACA
TTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCA
GAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTAT
AGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCA
TGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAA
ACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAA
AATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCATTTCAATATAATGTCACA
ATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAAA
TCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGCT
CCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTAT
AGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAA
ATTAAAACTTAACTAAAATAAAAAAAAAAAAAAAANAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgiylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISG
YSMNPPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERH
CLFHSDEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGED
IVITGSYLRLFGGP---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSE
TVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSF
QYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGAPCYRCSCLLL*ntfs
cekiyr*kilkkkm*i*nhkshmckikt*lk*kkkkxk
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxlfnkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyir
ifnessntnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wret
lfipfr*tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*r
yshywlifkiiwws---

---ynihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyryxqcklnsfir
ncssfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiixpi*lnii
si*chn*rn*ixsitkr*sxrc*n*iiqtikwfnnrxynw*cwwcsllsvllpitlkylf
v*knl*vknfkkknvnlksqityv*n*nltkikkkkkx

Frame B:
cwptgiylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISG
YSMNPPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERH
CLFHSDEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGED
IVITGSYLRLFGGP---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSE
TVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSF
QYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGAPCYRCSCLLL*ntfs
cekiyr*kilkkkm*i*nhkshmckikt*lk*kkkkxk

Frame C:
vgllxsi**klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqd
iq*ilqhq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdi
vysiqmnhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki
*sllahi*dylvv---

---qhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqixsmqa*qfhqk
lflfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyxsyltqhhf
nimsqlkklnyxhhqtlvkxmlklnhpnhqmv***vxqlvvlvvllaigalayyfkipfr
vkkfigkkf*kkkckfkitnhicvklkln*nkkkkkxn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP208 (CHP208Q) /CSM/CH/CHP2-A/CHP208Q.Seq.d/                       1217   0.0
SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/                       1128   0.0
SHC758 (SHC758Q) /CSM/SH/SHC7-C/SHC758Q.Seq.d/                       1128   0.0
SHC478 (SHC478Q) /CSM/SH/SHC4-D/SHC478Q.Seq.d/                       1128   0.0
SHA494 (SHA494Q) /CSM/SH/SHA4-D/SHA494Q.Seq.d/                       1128   0.0
CHF717 (CHF717Q) /CSM/CH/CHF7-A/CHF717Q.Seq.d/                       1128   0.0
SHG145 (SHG145Q) /CSM/SH/SHG1-B/SHG145Q.Seq.d/                       1122   0.0
CHR583 (CHR583Q) /CSM/CH/CHR5-D/CHR583Q.Seq.d/                       1122   0.0
AHN858 (AHN858Q) /CSM/AH/AHN8-C/AHN858Q.Seq.d/                       1122   0.0
SHC410 (SHC410Q) /CSM/SH/SHC4-A/SHC410Q.Seq.d/                       1110   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.   938   0.0    3
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.   938   0.0    6
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   6e-26  5
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    44   3e-07  15
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46   1e-05  15
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   9e-05  14
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   1e-04  24
U30821|U30821.1 Cyanophora paradoxa cyanelle, complete genome.     36   0.002  10
BX957222|BX957222.1 Methanococcus maripaludis S2 complete genome; segment 4/5.    34   0.004  14
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           30   0.006  31
dna update 2005. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   308   8e-86
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   298   6e-83
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   298   6e-83
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   298   6e-83
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   298   6e-83
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   298   6e-83
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   297   1e-82
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   285   7e-79
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   285   7e-79
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   285   7e-79
protein update 2009. 4.10
PSORT 

 psg: 1.02  gvh: 0.77  alm: 0.43  top: 0.07  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 20.0 %: plasma membrane
	 12.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  8.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for CHP208 is exc
5' end seq. ID CHP208F
5' end seq. 
>CHP208F.Seq
CTGTTGGCCTACTGGNATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTC
TCTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATC
ATTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGG
ATATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATT
AATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGA
ACCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACA
TTGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGT
ATGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGT
ATATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGA
TATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTNNNNNNNNNN
Length of 5' end seq. 593
3' end seq. ID CHP208Z
3' end seq. 
>CHP208Z.Seq
NNNNNNNNNNTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATA
TAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAG
CAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAG
AAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATG
ATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATT
CCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCAT
TTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAA
NAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTG
GTAGTGTTGGTGGTGCTCCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTT
CGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACA
AATCACATATGTGTAAAATTAAAACTTAACTAAAATAAAAAAAAAAAAAAAANAAAT
Length of 3' end seq. 657
Connected seq. ID CHP208P
Connected seq. 
>CHP208P.Seq
CTGTTGGCCTACTGGNATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTC
TCTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATC
ATTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGG
ATATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATT
AATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGA
ACCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACA
TTGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGT
ATGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGT
ATATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGA
TATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCT----------TACAACA
TTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCA
GAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTAT
AGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCA
TGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAA
ACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAA
AATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCATTTCAATATAATGTCACA
ATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAAA
TCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTGGTAGTGTTGGTGGTGCT
CCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTAT
AGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAA
ATTAAAACTTAACTAAAATAAAAAAAAAAAAAAAANAAAT
Length of connected seq. 1230
Full length Seq ID -
Full length Seq. -
Length of full length seq. -