>CHP203 (CHP203Q) /CSM/CH/CHP2-A/CHP203Q.Seq.d/
XXXXXXXXXXCTTCAAGTTAAAGTTTCAGCCGATGAACAATTGGATACTCATTTCACATT
GATTGAAACTGTTCCAAGGGATAGATTCTATGAACTATCCAATCAACAACCAATGAAATC
AAAATTCACAAAAGAACAACTTGCTCAAAGAATTAAAGGTGAGGCTGTTAGTGATCCAAG
ACATGGTCATGTTTTCTTGTATCTTGATAAAACGTTTACATTGCCACGTTATGACGCTCA
ATTTTCAAACTATCGTGATATCATCTCAAATCTAAATTTAGTTAGAACCGTTTTAATCAA
TGAAGACTATCTCACTGGCGCTCCAGATGAAATTTCAAATCAAAAGAAAACTATTTTCAT
AGATTCACCAGGTTTCGAGCCAAAAACTGAACATGACCCAGAGAAATTGTTGGGTAGTAT
TCGTGTGGTTCAATTCTTTCAGTCCACTAGTGATCTAACTTTGTTTATGATGAAAGCAAA
GGAATTGGCATTGGTTTCATCTCAGATTCAAATCGTTGAACTTTGTGTACTCTATAAGAC
CTATGGTGCTGATGTT

---QVKVSADEQLDTHFTLIETVPRDRFYELSNQQPMKSKFTKEQLAQRIKGEAVSDPRH
GHVFLYLDKTFTLPRYDAQFSNYRDIISNLNLVRTVLINEDYLTGAPDEISNQKKTIFID
SPGFEPKTEHDPEKLLGSIRVVQFFQSTSDLTLFMMKAKELALVSSQIQIVELCVLYKTY
GADV

Frame A:
---fklkfqpmnnwilish*lklfqgidsmnypinnq*nqnsqknnllkelkvrllviqd
mvmfscilikrlhchvmtlnfqtivissqi*i*lepf*smktislalqmkfqikrklfs*
ihqvssqklnmtqrncwvvfvwfnsfsplvi*lcl**kqrnwhwfhlrfkslnfvysirp
mvlm


Frame B:
---ss*sfsr*tigysfhid*ncskg*il*tiqsttneikihkrttcskn*r*gc**skt
wscflvs**nvyiatl*rsifkls*yhlkskfs*nrfnq*rlshwrsr*nfkskenyfhr
ftrfrakn*t*preivg*yscgsilsvh**snfvydeskgigigfisdsnr*tlctl*dl
wc*c


Frame C:
---QVKVSADEQLDTHFTLIETVPRDRFYELSNQQPMKSKFTKEQLAQRIKGEAVSDPRH
GHVFLYLDKTFTLPRYDAQFSNYRDIISNLNLVRTVLINEDYLTGAPDEISNQKKTIFID
SPGFEPKTEHDPEKLLGSIRVVQFFQSTSDLTLFMMKAKELALVSSQIQIVELCVLYKTY
GADV

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP203 (CHP203Q) /CSM/CH/CHP2-A/CHP203Q.Seq.d/                       1082   0.0
CHL104 (CHL104Q) /CSM/CH/CHL1-A/CHL104Q.Seq.d/                        472   e-132
CHQ580 (CHQ580Q) /CSM/CH/CHQ5-D/CHQ580Q.Seq.d/                        244   1e-63
SHA865 (SHA865Q) /CSM/SH/SHA8-C/SHA865Q.Seq.d/                        222   4e-57
CHF896 (CHF896Q) /CSM/CH/CHF8-D/CHF896Q.Seq.d/                        194   1e-48
AHD189 (AHD189Q) /CSM/AH/AHD1-D/AHD189Q.Seq.d/                        188   6e-47
CHF436 (CHF436Q) /CSM/CH/CHF4-B/CHF436Q.Seq.d/                        186   2e-46
AHD879 (AHD879Q) /CSM/AH/AHD8-D/AHD879Q.Seq.d/                        184   1e-45
AFM836 (AFM836Q) /CSM/AF/AFM8-B/AFM836Q.Seq.d/                        184   1e-45
AHH781 (AHH781Q) /CSM/AH/AHH7-D/AHH781Q.Seq.d/                        180   1e-44

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AV815736|AV815736.1 Arabidopsis thaliana cDNA clone:RAFL09-87-M05, 3'-end.    48   0.19   1
AC012216|AC012216.3 Homo sapiens chromosome 8 clone RP11-346C1 map 8, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44   0.22   4
CR383669|CR383669.14 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-25O1.    34   0.44   6
AL353698|AL353698.17 Human DNA sequence from clone RP13-188A5 on chromosome  Xp11.21-11.23.    46   0.73   1
W68846|W68846.1 zd43a08.s1 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone IMAGE:343382 3' similar to contains L1.t1 L1 repetitive element ;, mRNA sequence.    46   0.73   1
CT025742|CT025742.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-241D21.    34   0.78   4
AM025338|AM025338.1 Bos indicus 3' EST, clone C0005917f16.         38   1.1    2
AM024563|AM024563.1 Bos indicus 5' EST, clone C0005917f16.         38   1.1    2
AL627435|AL627435.19 Mouse DNA sequence from clone RP23-3M14 on chromosome X.    36   1.2    8
AC067854|AC067854.14 Homo sapiens chromosome 8, clone RP11-513H8, complete sequence.    34   1.3    6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000813_2231(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    36   0.74
FM178380_60(FM178380|pid:none) Aliivibrio salmonicida LFI1238 ch...    35   1.7
EU259868_1(EU259868|pid:none) Human metapneumovirus strain IND/0...    34   2.8
(A1W0I1) RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotran...    33   3.7
(Q5HTR7) RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotran...    33   3.7
(A8FMQ3) RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotran...    33   3.7
(Q9PN98) RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotran...    33   3.7
CP000685_576(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    33   4.8
AK131478_1(AK131478|pid:none) Homo sapiens cDNA FLJ16646 fis, cl...    32   8.2

 psg: 0.75  gvh: 0.27  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHP203 is nuc

>CHP203Z.Seq
NNNNNNNNNNCTTCAAGTTAAAGTTTCAGCCGATGAACAATTGGATACTCATTTCACATT
GATTGAAACTGTTCCAAGGGATAGATTCTATGAACTATCCAATCAACAACCAATGAAATC
AAAATTCACAAAAGAACAACTTGCTCAAAGAATTAAAGGTGAGGCTGTTAGTGATCCAAG
ACATGGTCATGTTTTCTTGTATCTTGATAAAACGTTTACATTGCCACGTTATGACGCTCA
ATTTTCAAACTATCGTGATATCATCTCAAATCTAAATTTAGTTAGAACCGTTTTAATCAA
TGAAGACTATCTCACTGGCGCTCCAGATGAAATTTCAAATCAAAAGAAAACTATTTTCAT
AGATTCACCAGGTTTCGAGCCAAAAACTGAACATGACCCAGAGAAATTGTTGGGTAGTAT
TCGTGTGGTTCAATTCTTTCAGTCCACTAGTGATCTAACTTTGTTTATGATGAAAGCAAA
GGAATTGGCATTGGTTTCATCTCAGATTCAAATCGTTGAACTTTGTGTACTCTATAAGAC
CTATGGTGCTGATGTT