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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP202
Library CH
(Link to library)
Clone ID CHP202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11582-1
Original site URL
Representative seq. ID CHP202P
(Link to Original site)
Representative DNA sequence 
>CHP202 (CHP202Q) /CSM/CH/CHP2-A/CHP202Q.Seq.d/
ATTTATTTAAAATTATTTATTATTTGTTTAAAATAATATAAATATATACATACTCACCAA
CAAATTAAATATATTAAAATAAAATATTTTAAATAAAAATTAAAAAAATTATACCCTTTT
CATAAAATTAAAAAATAACAATAAAAAAAAAAAAAAAAAAACNTTTAAAAAGATAAAAAA
AAAAAAATTAAAAATNAAAAAAAAAXXXXXXXXXXAATGTTCAAACTTACCAGTGGTTTG
TGAGATTAAAGATGCTTGTAACAAACCACAATGTGATATGGTCACTGGTAAATGCATTGT
CACCGATAATTGTAATGACAATAACATATGCAGTGACGATAGTTGCTCATTGGATGGCAC
ATGTATTCACACTAAAAAGAATTGTGATGATGGAAATAAATGTACAAATGATTTTTGTAA
AGTTGATATTGGCTGCGTTCATAGTAATATCACTTGTGAATCAAGTTCAGTTTGTATGGT
TGCAAGTTGTGATTCGAATAAAGGTTGTATTGAATCACCAATAGTCTGTCCATCAAGTGC
ATTTTGTTTAGTGGCTCAATGTGATGTAGGTTATGGTGGTTGTAATCAATATGATAAAGT
TTGTATACCTGATGATCCTCATTGTCAATATGGTATTTGTGATAACTCAACTAAAAAATG
TACATTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
fi*nyllfv*nniniyiltnklnilk*nilnkn*KNYTLFIKLKNNNKKKKKKTFKKIKK
KKLKXKKK---

---CSNLPVVCEIKDACNKPQCDMVTGKCIVTDNCNDNNICSDDSCSLDGTCIHTKKNCD
DGNKCTNDFCKVDIGCVHSNITCESSSVCMVASCDSNKGCIESPIVCPSSAFCLVAQCDV
GYGGCNQYDKVCIPDDPHCQYGICDNSTKKCTF
Translated Amino Acid sequence (All Frames) 
Frame A:
iylklfiiclk*ykyihthqqikyikikyfk*klkklypfhkikk*q*kkkkknx*kdkk
kkiknxkk---

---nvqtyqwfvrlkmlvtnhnviwslvnalspiivmtityavtivahwmahvftlkriv
mmeinvqmifvklilaafivislvnqvqfvwlqvvirikvvlnhq*svhqvhfv*wlnvm
*vmvvvinmikfvylmilivnmvfvitqlknvhf

Frame B:
fi*nyllfv*nniniyiltnklnilk*nilnkn*KNYTLFIKLKNNNKKKKKKTFKKIKK
KKLKXKKK---

---mfkltsgl*d*rcl*qttm*yghw*mhchr*l**q*hmq*r*lligwhmysh*kel*
*wk*myk*fl*s*ywlrs**yhl*ikfslygckl*fe*rly*itnslsikcilfsgsm*c
rlwwl*si**slyt**sslsiwyl**ln*kmyi

Frame C:
lfkiiyylfkii*iytysptn*iy*nkif*ikikkiipfs*n*kitikkkkkkxlkr*kk
kn*kxkk---

---CSNLPVVCEIKDACNKPQCDMVTGKCIVTDNCNDNNICSDDSCSLDGTCIHTKKNCD
DGNKCTNDFCKVDIGCVHSNITCESSSVCMVASCDSNKGCIESPIVCPSSAFCLVAQCDV
GYGGCNQYDKVCIPDDPHCQYGICDNSTKKCTF
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP202 (CHP202Q) /CSM/CH/CHP2-A/CHP202Q.Seq.d/                        898   0.0
SFE881 (SFE881Q) /CSM/SF/SFE8-D/SFE881Q.Seq.d/                        896   0.0
CHG601 (CHG601Q) /CSM/CH/CHG6-A/CHG601Q.Seq.d/                        896   0.0
CFH486 (CFH486Q) /CSM/CF/CFH4-D/CFH486Q.Seq.d/                        896   0.0
CFH274 (CFH274Q) /CSM/CF/CFH2-D/CFH274Q.Seq.d/                        896   0.0
CFJ814 (CFJ814Q) /CSM/CF/CFJ8-A/CFJ814Q.Seq.d/                        868   0.0
CFH643 (CFH643Q) /CSM/CF/CFH6-B/CFH643Q.Seq.d/                        793   0.0
CHH575 (CHH575Q) /CSM/CH/CHH5-D/CHH575Q.Seq.d/                        791   0.0
CHA328 (CHA328Q) /CSM/CH/CHA3-B/CHA328Q.Seq.d/                        759   0.0
CHH879 (CHH879Q) /CSM/CH/CHH8-D/CHH879Q.Seq.d/                        751   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z46933|Z46933.1 Caenorhabditis elegans Cosmid F34H10.              42   0.005  2
CE345121|CE345121.1 tigr-gss-dog-17000334123182 Dog Library Canis familiaris genomic, genomic survey sequence.    40   0.11   2
BX119907|BX119907.8 Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6.    44   0.14   4
CR385065|CR385065.21 Zebrafish DNA sequence from clone CH211-232F6 in linkage group 6.    44   0.17   4
AC156617|AC156617.8 Mus musculus chromosome 7, clone RP23-311N3, complete sequence.    42   0.18   5
BQ507132|BQ507132.2 EST614547 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGO57 3' end, mRNA sequence.    42   0.29   2
AC073968|AC073968.8 Homo sapiens BAC clone RP11-111G20 from 7, complete sequence.    40   0.30   4
BG597119|BG597119.1 EST495797 cSTS Solanum tuberosum cDNA clone cSTS16L8 5' sequence, mRNA sequence.    42   0.33   2
BQ507131|BQ507131.1 EST614546 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGO57 5' end, mRNA sequence.    42   0.33   2
CR450787|CR450787.6 Zebrafish DNA sequence from clone CH211-222O17 in linkage group 12.    46   0.89   1
dna update 2005. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                301   1e-80
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                137   4e-31
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   102   1e-20
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    96   9e-19
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    90   5e-17
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    89   1e-16
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    88   2e-16
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    88   2e-16
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    86   9e-16
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    84   3e-15
protein update 2009. 4.10
PSORT 

 psg: 0.15  gvh: 0.16  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.52  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CHP202 is nuc
5' end seq. ID CHP202F
5' end seq. 
>CHP202F.Seq
ATTTATTTAAAATTATTTATTATTTGTTTAAAATAATATAAATATATACATACTCACCAA
CAAATTAAATATATTAAAATAAAATATTTTAAATAAAAATTAAAAAAATTATACCCTTTT
CATAAAATTAAAAAATAACAATAAAAAAAAAAAAAAAAAAACNTTTAAAAAGATAAAAAA
AAAAAAATTAAAAATNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 215
3' end seq. ID CHP202Z
3' end seq. 
>CHP202Z.Seq
NNNNNNNNNNAATGTTCAAACTTACCAGTGGTTTGTGAGATTAAAGATGCTTGTAACAAA
CCACAATGTGATATGGTCACTGGTAAATGCATTGTCACCGATAATTGTAATGACAATAAC
ATATGCAGTGACGATAGTTGCTCATTGGATGGCACATGTATTCACACTAAAAAGAATTGT
GATGATGGAAATAAATGTACAAATGATTTTTGTAAAGTTGATATTGGCTGCGTTCATAGT
AATATCACTTGTGAATCAAGTTCAGTTTGTATGGTTGCAAGTTGTGATTCGAATAAAGGT
TGTATTGAATCACCAATAGTCTGTCCATCAAGTGCATTTTGTTTAGTGGCTCAATGTGAT
GTAGGTTATGGTGGTTGTAATCAATATGATAAAGTTTGTATACCTGATGATCCTCATTGT
CAATATGGTATTTGTGATAACTCAACTAAAAAATGTACATTTT
Length of 3' end seq. 463
Connected seq. ID CHP202P
Connected seq. 
>CHP202P.Seq
ATTTATTTAAAATTATTTATTATTTGTTTAAAATAATATAAATATATACATACTCACCAA
CAAATTAAATATATTAAAATAAAATATTTTAAATAAAAATTAAAAAAATTATACCCTTTT
CATAAAATTAAAAAATAACAATAAAAAAAAAAAAAAAAAAACNTTTAAAAAGATAAAAAA
AAAAAAATTAAAAATNAAAAAAAAA----------AATGTTCAAACTTACCAGTGGTTTG
TGAGATTAAAGATGCTTGTAACAAACCACAATGTGATATGGTCACTGGTAAATGCATTGT
CACCGATAATTGTAATGACAATAACATATGCAGTGACGATAGTTGCTCATTGGATGGCAC
ATGTATTCACACTAAAAAGAATTGTGATGATGGAAATAAATGTACAAATGATTTTTGTAA
AGTTGATATTGGCTGCGTTCATAGTAATATCACTTGTGAATCAAGTTCAGTTTGTATGGT
TGCAAGTTGTGATTCGAATAAAGGTTGTATTGAATCACCAATAGTCTGTCCATCAAGTGC
ATTTTGTTTAGTGGCTCAATGTGATGTAGGTTATGGTGGTTGTAATCAATATGATAAAGT
TTGTATACCTGATGATCCTCATTGTCAATATGGTATTTGTGATAACTCAACTAAAAAATG
TACATTTT
Length of connected seq. 658
Full length Seq ID -
Full length Seq. -
Length of full length seq. -