>CHP192 (CHP192Q) /CSM/CH/CHP1-D/CHP192Q.Seq.d/
CTGTTGGCCTACTGGGTGTATGGCAGTATTAACAAATAAATAAATTAATTAAATAAATAA
ATAAAAAAAATAAATAAATAAAAAAATAAAAAAATATTAACATTATTATTTTTTTTTTTT
TTTXXXXXXXXXXGGTTACATATTAGGAAGATGGTCGATTGGGTGGCTGATAATTATCAA
ACNTAAGGATGAAGGTATTTGGGAAGTTAGAAGTGGTAAACAACATTTCACCTACTCCAA
GATAATGTGTTGGGTGGCATTGGATAGAGGATTGCGTTTGGCAGATCGTAGATCATTCCC
AGCCCCACGTGATAAATGGACAAAGATTACTCAATTCTATGGTAGTAAAGCATTGGATGC
TTCAACATTGATAATGTCGTTGGTTTTCTTTATGGCTCCATCAGACCCAAGAAATTTAGC
AACATTAGAAGCAATACTCAAACCAGTGGAAGAAGGAGGTCTAGTTGCAAACTCTTTGGT
ATTTCGTTATAATCTAACCCATGGTCATGATGATCATATTGCAACCGATGGTTTGGATGG
TGAAGAAGGTACTTTCAATATTTGTACATTTTGGTTAATCGAAAGTTTAACAAGAGCTTC
CGTTGTCAATAAAGAATATNCTAGTTAAAGCTCGTTTAATATTTGATGAAATGTTAGGTT
ATGCAAATCATTTGGGTTTATTCTNCTGAAGAAATTGGTATTGGTGGTGAAGCTTTAGGT
AATTTTCCACAAGCTTTCACTCATTTAAGTTTAATTAGTGCTG

llaywvygsink*in*lnk*ikkink*KNKKILTLLFFFFF---

---GYILGRWSIGWLIIIKXKDEGIWEVRSGKQHFTYSKIMCWVALDRGLRLADRRSFPA
PRDKWTKITQFYGSKALDASTLIMSLVFFMAPSDPRNLATLEAILKPVEEGGLVANSLVF
RYNLTHGHDDHIATDGLDGEEGTFNICTFWLIESLTRASVVNKEYXS*ssfni**nvrlc
ksfgfillkklvlvvkl*vifhklsli*v*lvl

Frame A:
llaywvygsink*in*lnk*ikkink*KNKKILTLLFFFFF---

---GYILGRWSIGWLIIIKXKDEGIWEVRSGKQHFTYSKIMCWVALDRGLRLADRRSFPA
PRDKWTKITQFYGSKALDASTLIMSLVFFMAPSDPRNLATLEAILKPVEEGGLVANSLVF
RYNLTHGHDDHIATDGLDGEEGTFNICTFWLIESLTRASVVNKEYXS*ssfni**nvrlc
ksfgfillkklvlvvkl*vifhklsli*v*lvl

Frame B:
cwptgcmavltnk*in*ink*kk*inkkikky*hyyffff---

---vty*edgrlgg**lsnxrmkvfgklevvnnisptpr*cvgwhwiedcvwqivdhsqp
hvingqrllnsmvvkhwmlqh**crwfslwlhqtqei*qh*kqysnqwkkev*lqtlwyf
vii*pmvmmiilqpmvwmvkkvlsifvhfg*skv*qelplsiknxlvkarlifdemlgya
nhlglfx*rnwyww*sfr*fstsfhsfkfn*c

Frame C:
vgllgvwqy*qinklik*inkknk*ikk*kniniiiffff---

---lhirkmvdwvadnyqt*g*rylgs*kw*ttfhllqdnvlggig*riafgrs*iipsp
t**mdkdysilw**sigcfnidnvvgflygsirpkkfsnirsntqtsgrrrsscklfgis
l*snpws**sycnrwfgw*rryfqylyilvnrkfnksfrcq*rix*lklv*ylmkc*vmq
iiwvysxeeigiggealgnfpqafthlslisa

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP192 (CHP192Q) /CSM/CH/CHP1-D/CHP192Q.Seq.d/                       1231   0.0
AFH367 (AFH367Q) /CSM/AF/AFH3-C/AFH367Q.Seq.d/                       1195   0.0
AFF231 (AFF231Q) /CSM/AF/AFF2-B/AFF231Q.Seq.d/                       1195   0.0
SFL276 (SFL276Q) /CSM/SF/SFL2-D/SFL276Q.Seq.d/                       1191   0.0
CHL556 (CHL556Q) /CSM/CH/CHL5-C/CHL556Q.Seq.d/                       1148   0.0
CFE371 (CFE371Q) /CSM/CF/CFE3-C/CFE371Q.Seq.d/                       1124   0.0
CHF720 (CHF720Q) /CSM/CH/CHF7-A/CHF720Q.Seq.d/                       1114   0.0
AFM857 (AFM857Q) /CSM/AF/AFM8-C/AFM857Q.Seq.d/                       1086   0.0
SFC467 (SFC467Q) /CSM/SF/SFC4-C/SFC467Q.Seq.d/                         44   0.003
SSH444 (SSH444Q) /CSM/SS/SSH4-B/SSH444Q.Seq.d/                         42   0.012

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   862   0.0    4
CJ443019|CJ443019.1 Macaca fascicularis mRNA, clone: QccE-20558, 5' end, expressed in cerebellum cortex.    50   0.065  1
CJ447224|CJ447224.1 Macaca fascicularis mRNA, clone: QflA-12546, 5' end, expressed in brain frontal lobe.    48   0.26   1
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    46   1.0    1
CJ453173|CJ453173.1 Macaca fascicularis mRNA, clone: QflA-18860, 5' end, expressed in brain frontal lobe.    36   2.4    2
CJ471198|CJ471198.1 Macaca fascicularis mRNA, clone: QorA-10829, 5' end, expressed in brain occipital lobe.    38   2.6    2
CT005252|CT005252.1 Leishmania major chromosome 13 strain Friedlin, complete sequence LmjF13_01_20050601_V5.2.    44   4.0    1
AC139133|AC139133.11 Mus musculus chromosome 15, clone RP23-412G9, complete sequence.    44   4.0    1
CJ484070|CJ484070.1 Macaca fascicularis mRNA, clone: QtsA-11592, 5' end, expressed in testis.    44   4.0    1
CJ465493|CJ465493.1 Macaca fascicularis mRNA, clone: QnpA-14603, 5' end, expressed in brain parietal lobe.    44   4.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_60(AC117076|pid:none) Dictyostelium discoideum chromoso...   273   9e-90
CP000127_1538(CP000127|pid:none) Nitrosococcus oceani ATCC 19707...   150   2e-45
CP000975_1297(CP000975|pid:none) Methylacidiphilum infernorum V4...   147   1e-41
CU633901_309(CU633901|pid:none) Podospora anserina genomic DNA c...   128   4e-31
CP000386_1245(CP000386|pid:none) Rubrobacter xylanophilus DSM 99...   109   7e-31
AM746676_8064(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   111   9e-31
CP000249_3927(CP000249|pid:none) Frankia sp. CcI3, complete geno...   108   2e-30
BA000030_98(BA000030|pid:none) Streptomyces avermitilis MA-4680 ...   109   6e-30
CT573213_6144(CT573213|pid:none) Frankia alni str. ACN14A chromo...   105   2e-29
CP000820_729(CP000820|pid:none) Frankia sp. EAN1pec, complete ge...   104   2e-29

 psg: 1.02  gvh: 0.67  alm: 0.35  top: 0.33  tms: 0.00  mit: 0.25  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for CHP192 is exc

>CHP192F.Seq
CTGTTGGCCTACTGGGTGTATGGCAGTATTAACAAATAAATAAATTAATTAAATAAATAA
ATAAAAAAAATAAATAAATAAAAAAATAAAAAAATATTAACATTATTATTTTTTTTTTTT
TTTNNNNNNNNNN

>CHP192Z.Seq
NNNNNNNNNNGGTTACATATTAGGAAGATGGTCGATTGGGTGGCTGATAATTATCAAACN
TAAGGATGAAGGTATTTGGGAAGTTAGAAGTGGTAAACAACATTTCACCTACTCCAAGAT
AATGTGTTGGGTGGCATTGGATAGAGGATTGCGTTTGGCAGATCGTAGATCATTCCCAGC
CCCACGTGATAAATGGACAAAGATTACTCAATTCTATGGTAGTAAAGCATTGGATGCTTC
AACATTGATAATGTCGTTGGTTTTCTTTATGGCTCCATCAGACCCAAGAAATTTAGCAAC
ATTAGAAGCAATACTCAAACCAGTGGAAGAAGGAGGTCTAGTTGCAAACTCTTTGGTATT
TCGTTATAATCTAACCCATGGTCATGATGATCATATTGCAACCGATGGTTTGGATGGTGA
AGAAGGTACTTTCAATATTTGTACATTTTGGTTAATCGAAAGTTTAACAAGAGCTTCCGT
TGTCAATAAAGAATATNCTAGTTAAAGCTCGTTTAATATTTGATGAAATGTTAGGTTATG
CAAATCATTTGGGTTTATTCTNCTGAAGAAATTGGTATTGGTGGTGAAGCTTTAGGTAAT
TTTCCACAAGCTTTCACTCATTTAAGTTTAATTAGTGCTG

>CHP192P.Seq
CTGTTGGCCTACTGGGTGTATGGCAGTATTAACAAATAAATAAATTAATTAAATAAATAA
ATAAAAAAAATAAATAAATAAAAAAATAAAAAAATATTAACATTATTATTTTTTTTTTTT
TTT----------GGTTACATATTAGGAAGATGGTCGATTGGGTGGCTGATAATTATCAA
ACNTAAGGATGAAGGTATTTGGGAAGTTAGAAGTGGTAAACAACATTTCACCTACTCCAA
GATAATGTGTTGGGTGGCATTGGATAGAGGATTGCGTTTGGCAGATCGTAGATCATTCCC
AGCCCCACGTGATAAATGGACAAAGATTACTCAATTCTATGGTAGTAAAGCATTGGATGC
TTCAACATTGATAATGTCGTTGGTTTTCTTTATGGCTCCATCAGACCCAAGAAATTTAGC
AACATTAGAAGCAATACTCAAACCAGTGGAAGAAGGAGGTCTAGTTGCAAACTCTTTGGT
ATTTCGTTATAATCTAACCCATGGTCATGATGATCATATTGCAACCGATGGTTTGGATGG
TGAAGAAGGTACTTTCAATATTTGTACATTTTGGTTAATCGAAAGTTTAACAAGAGCTTC
CGTTGTCAATAAAGAATATNCTAGTTAAAGCTCGTTTAATATTTGATGAAATGTTAGGTT
ATGCAAATCATTTGGGTTTATTCTNCTGAAGAAATTGGTATTGGTGGTGAAGCTTTAGGT
AATTTTCCACAAGCTTTCACTCATTTAAGTTTAATTAGTGCTG