CHP190
Library CH
(Link to library)
Clone ID CHP190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16308-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHP190 (CHP190Q) /CSM/CH/CHP1-D/CHP190Q.Seq.d/
XXXXXXXXXXGTTATTATCCAACTATTAATTCAGTTTATATCGAATCTCAAAGTACTGGA
AAAAGATTTGTTTGTAATAATGATAGATCAAGAGGTGTTTCAAGTCAAGGTCAAGGTTGC
TTGGAAATGGCATTACATAGAAGTTTAACTTATGAAGATGGTAAAGGTTTAGAAATTCCT
GCAATTGATGAATCCTCAATTAATGCACGTTTTGAATGTTATTTAGATGAAGTACCATCA
AATTCACAACAATCGAATGGTGGTGGTGGTGGTGATGATATTAGAAAACAATCAATTAAT
TATCAACATAAATTCCAAATTTATCAAGGTCAAGATTCTTCTTATATGTCTTCAAAATCT
TTTATGTTAAAACCATTACCAGAGTTTATTCATATTCTATCAATGGAAAGATCTGGTCCT
CGTTCAATTAAATTAAGAATTCATAATATTGAAAATAATAATCAATCTCCAATCACTTTT
GATTTAAATGGCTTATTCTCTTTTATCAAATCAATTAAATCAATTAAAGAATATAATTTA
TCTTTAATCAATAGATTCGTTGATAATAATATTGATAATATTATTTCTTNCTCATCGTTC
AATTGTTGGAAAAAATCTTTTCCCTATTAAAGATACTCCAACTCGTTTCAACCCAATTAA
TACAAAACAAACTAAAATTACCTTATA
sequence update 2002. 9.10
Translated Amino Acid sequence
---YYPTINSVYIESQSTGKRFVCNNDRSRGVSSQGQGCLEMALHRSLTYEDGKGLEIPA
IDESSINARFECYLDEVPSNSQQSNGGGGGDDIRKQSINYQHKFQIYQGQDSSYMSSKSF
MLKPLPEFIHILSMERSGPRSIKLRIHNIENNNQSPITFDLNGLFSFIKSIKSIKEYNLS
LINRFVDNNIDNIISXSSFNCWKKSFPY*rysnsfqpn*yktn*nyli


Translated Amino Acid sequence (All Frames)
Frame A:
---llsny*fslyriskywkkicl****ikrcfksrsrllgngit*kfnl*rw*rfrnsc
n**iln*ctf*mlfr*stikfttiewwwww**y*ktin*lst*ipnlsrsrfflyvfkif
yvktitrvysysingkiwssfn*ikns*y*k**sisnhf*fkwlilfyqin*in*ri*fi
fnq*ir***y**yyfxlivqllekifsllkilqlvstqliqnklklpy


Frame B:
---YYPTINSVYIESQSTGKRFVCNNDRSRGVSSQGQGCLEMALHRSLTYEDGKGLEIPA
IDESSINARFECYLDEVPSNSQQSNGGGGGDDIRKQSINYQHKFQIYQGQDSSYMSSKSF
MLKPLPEFIHILSMERSGPRSIKLRIHNIENNNQSPITFDLNGLFSFIKSIKSIKEYNLS
LINRFVDNNIDNIISXSSFNCWKKSFPY*rysnsfqpn*yktn*nyli


Frame C:
---iiqlliqfisnlkvlekdlfvimidqevfqvkvkvawkwhyiev*lmkmvkv*kflq
lmnpqlmhvlnvi*mkyhqihnnrmvvvvvmilennqliininskfikvkilliclqnll
c*nhyqslfifyqwkdlvlvqln*efiilkiiinlqslli*maysllsnqlnqlkniiyl
*sidsliiiliilflxhrsivgknlfpikdtptrfnpintkqtkitl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP190 (CHP190Q) /CSM/CH/CHP1-D/CHP190Q.Seq.d/ 813 0.0
SSM227 (SSM227Q) /CSM/SS/SSM2-B/SSM227Q.Seq.d/ 803 0.0
SLD172 (SLD172Q) /CSM/SL/SLD1-C/SLD172Q.Seq.d/ 803 0.0
SHL374 (SHL374Q) /CSM/SH/SHL3-D/SHL374Q.Seq.d/ 803 0.0
SHL251 (SHL251Q) /CSM/SH/SHL2-C/SHL251Q.Seq.d/ 803 0.0
SHL163 (SHL163Q) /CSM/SH/SHL1-C/SHL163Q.Seq.d/ 803 0.0
SHK514 (SHK514Q) /CSM/SH/SHK5-A/SHK514Q.Seq.d/ 803 0.0
SHJ720 (SHJ720Q) /CSM/SH/SHJ7-A/SHJ720Q.Seq.d/ 803 0.0
SHH474 (SHH474Q) /CSM/SH/SHH4-D/SHH474Q.Seq.d/ 803 0.0
SHH435 (SHH435Q) /CSM/SH/SHH4-B/SHH435Q.Seq.d/ 803 0.0

own update 2002.10. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 2e-10 15
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 44 7e-09 11
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome. 38 2e-08 20
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 36 2e-08 12
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 38 3e-08 27
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 32 1e-07 14
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 32 3e-07 20
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 36 5e-07 13
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 34 6e-07 23
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 1e-06 17
dna update 2005. 9.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q29451) RecName: Full=Lysosomal alpha-mannosidase; Sho... 57 7e-07
(Q54YC4) RecName: Full=Alpha-mannosidase D; EC=3.2.1.24... 54 6e-06
BC061819_1(BC061819|pid:none) Rattus norvegicus mannosidase, alp... 53 1e-05
AY036155_1(AY036155|pid:none) Cavia porcellus lysosomal alpha-ma... 53 1e-05
(Q8VHC8) RecName: Full=Lysosomal alpha-mannosidase; Sho... 53 1e-05
AK291572_1(AK291572|pid:none) Homo sapiens cDNA FLJ76867 complet... 52 1e-05
U05572_1(U05572|pid:none) Human lysosomal alpha-mannosidase (MAN... 52 1e-05
AB209921_1(AB209921|pid:none) Homo sapiens mRNA for mannosidase,... 52 1e-05
AK004817_1(AK004817|pid:none) Mus musculus adult male lung cDNA,... 52 2e-05
U87240_1(U87240|pid:none) Mus musculus lysosomal alpha-mannosida... 52 2e-05
protein update 2009. 5.20
PSORT

psg: 0.75 gvh: 0.40 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHP190 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHP190Z
3' end seq.
>CHP190Z.Seq
NNNNNNNNNNGTTATTATCCAACTATTAATTCAGTTTATATCGAATCTCAAAGTACTGGA
AAAAGATTTGTTTGTAATAATGATAGATCAAGAGGTGTTTCAAGTCAAGGTCAAGGTTGC
TTGGAAATGGCATTACATAGAAGTTTAACTTATGAAGATGGTAAAGGTTTAGAAATTCCT
GCAATTGATGAATCCTCAATTAATGCACGTTTTGAATGTTATTTAGATGAAGTACCATCA
AATTCACAACAATCGAATGGTGGTGGTGGTGGTGATGATATTAGAAAACAATCAATTAAT
TATCAACATAAATTCCAAATTTATCAAGGTCAAGATTCTTCTTATATGTCTTCAAAATCT
TTTATGTTAAAACCATTACCAGAGTTTATTCATATTCTATCAATGGAAAGATCTGGTCCT
CGTTCAATTAAATTAAGAATTCATAATATTGAAAATAATAATCAATCTCCAATCACTTTT
GATTTAAATGGCTTATTCTCTTTTATCAAATCAATTAAATCAATTAAAGAATATAATTTA
TCTTTAATCAATAGATTCGTTGATAATAATATTGATAATATTATTTCTTNCTCATCGTTC
AATTGTTGGAAAAAATCTTTTCCCTATTAAAGATACTCCAACTCGTTTCAACCCAATTAA
TACAAAACAAACTAAAATTACCTTATA
Length of 3' end seq. 687
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -