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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP188
Library CH
(Link to library)
Clone ID CHP188
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14443-1
Original site URL
Representative seq. ID CHP188P
(Link to Original site)
Representative DNA sequence 
>CHP188 (CHP188Q) /CSM/CH/CHP1-D/CHP188Q.Seq.d/
ACTGTTGGCCTACTGGNAAAAAAAGNAACTTATATTTTTAAACAATTGTTATATTAATAA
CACAATAATTAAATAAATAATTTTATAAAAAAAAAAATAANCCATCAATAATTGATTTTG
TTTTTTCCAAACAATTAAAAAAAATAATAATAATAAATATAAAAGAAAAAAAAAAXXXXX
XXXXXAAAAAAAANATACTTATATTTTTAAACAATTGTTATATTAATAACNCAATAATTA
AATAAATAATTTTATAAAAAAAAAAATAAACCATCAATAATTGATTTGTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgkkxnlyf*tivilitq*lnk*FYKKKNXPSIIDFVFSKQLKKIIIINIKEKK---

---KKXILIFLNNCYINNXIIK*iil*kkk*tinn*fvf
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxkkxtyifkqlly**hnn*innfikkkixhq*lilffpnn*kk****i*kkkk--
-

---KKXILIFLNNCYINNXIIK*iil*kkk*tinn*fvf

Frame B:
llaywxkkxliflnncyinntiik*iil*kkk*xinn*fcffqtikknnnnkykrkkk--
-

---kkxylyf*tivilitq*lnk*fykkknkpsiidlf

Frame C:
cwptgkkxnlyf*tivilitq*lnk*FYKKKNXPSIIDFVFSKQLKKIIIINIKEKK---

---kkxtyifkqlly**xnn*innfikkkinhq*licf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP188 (CHP188Q) /CSM/CH/CHP1-D/CHP188Q.Seq.d/                        125   4e-28
SSC306 (SSC306Q) /CSM/SS/SSC3-A/SSC306Q.Seq.d/                        115   4e-25
VSC891 (VSC891Q) /CSM/VS/VSC8-D/VSC891Q.Seq.d/                         40   0.018
VHI464 (VHI464Q) /CSM/VH/VHI4-C/VHI464Q.Seq.d/                         40   0.018
SSM582 (SSM582Q) /CSM/SS/SSM5-D/SSM582Q.Seq.d/                         40   0.018
SSD882 (SSD882Q) /CSM/SS/SSD8-D/SSD882Q.Seq.d/                         40   0.018
FC-IC1237 (FC-IC1237Q) /CSM/FC-IC/FC-IC1237Q.Seq.d/                    40   0.018
CFG307 (CFG307Q) /CSM/CF/CFG3-A/CFG307Q.Seq.d/                         40   0.018
AFM782 (AFM782Q) /CSM/AF/AFM7-D/AFM782Q.Seq.d/                         40   0.018
AFJ762 (AFJ762Q) /CSM/AF/AFJ7-C/AFJ762Q.Seq.d/                         40   0.018
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    34   3e-04  8
BX936414|BX936414.6 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone  CH211-97J6.    36   0.002  7
CG723671|CG723671.1 1119077E09.x1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    40   0.002  2
CG731648|CG731648.1 1119142E09.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    38   0.003  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.003  7
AC114258|AC114258.3 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence.    36   0.006  4
CZ915484|CZ915484.1 4013011F07.2EL_x1 4013 - RescueMu Grid O Zea mays genomic, genomic survey sequence.    40   0.006  2
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    38   0.006  8
AX345239|AX345239.1 Sequence 310 from Patent WO0200928.            36   0.009  4
AL139337|AL139337.12 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-400P10.    38   0.010  4
dna update 2005. 9.18
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 166,370,336
protein update 2009. 4.10
PSORT 

 psg: 0.72  gvh: 0.24  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHP188 is nuc
5' end seq. ID CHP188F
5' end seq. 
>CHP188F.Seq
ACTGTTGGCCTACTGGNAAAAAAAGNAACTTATATTTTTAAACAATTGTTATATTAATAA
CACAATAATTAAATAAATAATTTTATAAAAAAAAAAATAANCCATCAATAATTGATTTTG
TTTTTTCCAAACAATTAAAAAAAATAATAATAATAAATATAAAAGAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 185
3' end seq. ID CHP188Z
3' end seq. 
>CHP188Z.Seq
NNNNNNNNNNAAAAAAAANATACTTATATTTTTAAACAATTGTTATATTAATAACNCAAT
AATTAAATAAATAATTTTATAAAAAAAAAAATAAACCATCAATAATTGATTTGTTTTT
Length of 3' end seq. 118
Connected seq. ID CHP188P
Connected seq. 
>CHP188P.Seq
ACTGTTGGCCTACTGGNAAAAAAAGNAACTTATATTTTTAAACAATTGTTATATTAATAA
CACAATAATTAAATAAATAATTTTATAAAAAAAAAAATAANCCATCAATAATTGATTTTG
TTTTTTCCAAACAATTAAAAAAAATAATAATAATAAATATAAAAGAAAAAAAAAA-----
-----AAAAAAAANATACTTATATTTTTAAACAATTGTTATATTAATAACNCAATAATTA
AATAAATAATTTTATAAAAAAAAAAATAAACCATCAATAATTGATTTGTTTTT
Length of connected seq. 283
Full length Seq ID -
Full length Seq. -
Length of full length seq. -