NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP181
Library CH
(Link to library)
Clone ID CHP181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHP181P
(Link to Original site)
Representative DNA sequence 
>CHP181 (CHP181Q) /CSM/CH/CHP1-D/CHP181Q.Seq.d/
ACTGTTGGCCTACTGGNAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATA
AATATATAAAGATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAA
TTTTTTTTTTTAATTCACACNCATNCATATAAATATTAAATAATTAAATATTAAGAAATG
TCATCAATTGGTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGAT
CGTGTTGAAATTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTT
ACTGATACAGAACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACC
AATACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAA
AGTGATATGAAACATTGGCCATTCAAAGTTATTCTAAAGGATGGTGATAAGCCACATATT
CAAGTTGAATTCAAAGGTGAAACTAAAGTTTTCTCXXXXXXXXXXGAAAACTCAAACNTT
CTCTACATACTCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGC
TATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACC
AAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAGATG
TATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAG
GTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAAC
AAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCA
CTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAAT
CAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAG
AAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGA
GTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAA
ATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGATTTTTCAGA
GGAAAACTNCNCTACAAATAGTTTNCTTAAAAAATATAAGTTAGTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllxiq*fnliynnnnsini*rliflyinfck*ink**ffflihthxyky*iiky*EM
SSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT
NTVFDAKRLIGRKFSDKEVQSDMKHWPFKVILKDGDKPHIQVEFKGETKVF---

---KTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDV
DANGILRCIS*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike
*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslr
sscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirltdfseenxxtnsxlkky
klv
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxiq*fnliynnnnsini*rliflyinfck*ink**ffflihthxyky*iiky*EM
SSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT
NTVFDAKRLIGRKFSDKEVQSDMKHWPFKVILKDGDKPHIQVEFKGETKVF---

---ensnxlyil**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c
*ckwylkmyqlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqr
inwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*
kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgffrgklxyk*fx*ki
*vsk

Frame B:
llaywxfsssi*fiiiiiv*iykd*ffci*ifvnk*innnfff*ftxxhinik*lnikkc
hqlvli*vqhihvlvfgkmivlkllqmikvieplhlmlhlliqnv*lvmlqriklq*iqp
iqylmlnv*lvvnlvtkkfkvi*nighsklf*rmvishifklnskvklkfs---

---KTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDV
DANGILRCIS*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike
*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslr
sscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirltdfseenxxtnsxlkky
klv

Frame C:
cwptgnsvvqfnl*****ykyikinffvykfl*ink*iiifffnshxxi*ilnn*ilrnv
inwy*frynifmcwclak*sc*nyck*sr**nhsilcciy*yrtfnw*cckesscnesnq
ysi*c*tfnws*i**qrssk*yetlaiqsyskgw**atyss*iqr*n*sfl---

---klkxslhtliinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlml
mqmvs*dvsaedkstgnkqkititndkgrlskeeiekmvadaekfkqqdeqqkdrveskn
klenyaftvknsikdekvaakisdsdkstiesetesvlkwlesnqtaekdeyedkmkale
avvnpimsklyqeggmpqgggmpggmsndspkssnnkvdeld*rifqrktxlqivxlkni
s**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP181 (CHP181Q) /CSM/CH/CHP1-D/CHP181Q.Seq.d/                       2119   0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                       1336   0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/                       1336   0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/                       1336   0.0
VHP224 (VHP224Q) /CSM/VH/VHP2-A/VHP224Q.Seq.d/                       1336   0.0
VHO655 (VHO655Q) /CSM/VH/VHO6-C/VHO655Q.Seq.d/                       1336   0.0
VHO566 (VHO566Q) /CSM/VH/VHO5-C/VHO566Q.Seq.d/                       1336   0.0
VHO461 (VHO461Q) /CSM/VH/VHO4-C/VHO461Q.Seq.d/                       1336   0.0
VHO443 (VHO443Q) /CSM/VH/VHO4-B/VHO443Q.Seq.d/                       1336   0.0
VHN562 (VHN562Q) /CSM/VH/VHN5-C/VHN562Q.Seq.d/                       1336   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   942   0.0    4
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   934   0.0    4
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   252   3e-99  6
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.   145   1e-93  9
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   252   5e-93  11
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          129   6e-83  6
A58313|A58313.1 Sequence 1 from Patent WO9636707.                 129   6e-83  6
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70.   129   1e-82  6
DQ060426|DQ060426.1 Cryptosporidium andersoni strain zzca heat shock protein 70-like gene, partial sequence.   127   7e-80  8
AY954892|AY954892.1 Cryptosporidium andersoni strain HenanZhzhca heat shock protein 70 gene, partial cds.   123   1e-79  9
dna update 2005. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   242   6e-95
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   242   6e-95
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   182   8e-66
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot...   182   2e-65
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   189   3e-65
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   189   4e-65
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   194   8e-65
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   188   1e-64
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   188   1e-64
U70213_1(U70213|pid:none) Mesocestoides corti heat shock 70kDa p...   181   1e-64
protein update 2009. 4.10
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHP181 is nuc
5' end seq. ID CHP181F
5' end seq. 
>CHP181F.Seq
ACTGTTGGCCTACTGGNAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATA
AATATATAAAGATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAA
TTTTTTTTTTTAATTCACACNCATNCATATAAATATTAAATAATTAAATATTAAGAAATG
TCATCAATTGGTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGAT
CGTGTTGAAATTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTT
ACTGATACAGAACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACC
AATACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAA
AGTGATATGAAACATTGGCCATTCAAAGTTATTCTAAAGGATGGTGATAAGCCACATATT
CAAGTTGAATTCAAAGGTGAAACTAAAGTTTTCTCNNNNNNNNNN
Length of 5' end seq. 525
3' end seq. ID CHP181Z
3' end seq. 
>CHP181Z.Seq
NNNNNNNNNNGAAAACTCAAACNTTCTCTACATACTCTGATAATCAACCAGGTGTATTAA
TTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTG
AACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATG
TTGATGCAAATGGTATCTTAAGATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAA
AAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTT
GCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAG
AATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCA
GCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAA
TGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTA
GAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGT
GGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGAC
GAATTAGATTGACGGATTTTTCAGAGGAAAACTNCNCTACAAATAGTTTNCTTAAAAAAT
ATAAGTTAGTAAA
Length of 3' end seq. 733
Connected seq. ID CHP181P
Connected seq. 
>CHP181P.Seq
ACTGTTGGCCTACTGGNAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATA
AATATATAAAGATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAA
TTTTTTTTTTTAATTCACACNCATNCATATAAATATTAAATAATTAAATATTAAGAAATG
TCATCAATTGGTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGAT
CGTGTTGAAATTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTT
ACTGATACAGAACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACC
AATACAGTATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAA
AGTGATATGAAACATTGGCCATTCAAAGTTATTCTAAAGGATGGTGATAAGCCACATATT
CAAGTTGAATTCAAAGGTGAAACTAAAGTTTTCTC----------GAAAACTCAAACNTT
CTCTACATACTCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGC
TATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACC
AAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAGATG
TATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAG
GTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAAC
AAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCA
CTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAAT
CAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAG
AAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGA
GTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAA
ATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGATTTTTCAGA
GGAAAACTNCNCTACAAATAGTTTNCTTAAAAAATATAAGTTAGTAAA
Length of connected seq. 1238
Full length Seq ID -
Full length Seq. -
Length of full length seq. -