>CHP171 (CHP171Q) /CSM/CH/CHP1-C/CHP171Q.Seq.d/
CTGTTGGCCTACTGGNAAAAATATAATTAACATNCTAAAAATAAACCAAAAAAAAACAAT
TTTATTTATTAAGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAAAAAAAAA
AAAAAAAAAAAAATTTTNNNTTTTTTTAANNAAAAAAXXXXXXXXXX

CWPTGKNIINXLKINQKKTILFIKXKKKKKKKKKKKXKKKKKKKFXXFLXK---

Frame A:
llaywxkyn*hxknkpkknnfiy*xkkkkkkkkkkkxkkkkkkkixxffxxk---


Frame B:
CWPTGKNIINXLKINQKKTILFIKXKKKKKKKKKKKXKKKKKKKFXXFLXK---


Frame C:
vgllxki*ltx*k*tkkkqfyllxkkkkkkkkkkkxxkkkkkknfxff*xk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ576 (SHJ576Q) /CSM/SH/SHJ5-D/SHJ576Q.Seq.d/                         82   3e-15
CHP393 (CHP393Q) /CSM/CH/CHP3-D/CHP393Q.Seq.d/                         82   3e-15
CHP171 (CHP171Q) /CSM/CH/CHP1-C/CHP171Q.Seq.d/                         82   3e-15
SHA668 (SHA668Q) /CSM/SH/SHA6-C/SHA668Q.Seq.d/                         72   3e-12
CHP667 (CHP667Q) /CSM/CH/CHP6-C/CHP667Q.Seq.d/                         72   3e-12
CHP314 (CHP314Q) /CSM/CH/CHP3-A/CHP314Q.Seq.d/                         58   4e-08
CHF789 (CHF789Q) /CSM/CH/CHF7-D/CHF789Q.Seq.d/                         54   6e-07
AHM204 (AHM204Q) /CSM/AH/AHM2-A/AHM204Q.Seq.d/                         50   1e-05
SHJ811 (SHJ811Q) /CSM/SH/SHJ8-A/SHJ811Q.Seq.d/                         46   2e-04
SHG869 (SHG869Q) /CSM/SH/SHG8-C/SHG869Q.Seq.d/                         46   2e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ433570|CJ433570.1 Macaca fascicularis mRNA, clone: QccE-10527, 5' end, expressed in cerebellum cortex.    46   0.20   1
CJ456274|CJ456274.1 Macaca fascicularis mRNA, clone: QflA-22103, 5' end, expressed in brain frontal lobe.    36   0.36   3
CJ488315|CJ488315.1 Macaca fascicularis mRNA, clone: QtsA-16020, 5' end, expressed in testis.    36   0.41   2
CJ451671|CJ451671.1 Macaca fascicularis mRNA, clone: QflA-17289, 5' end, expressed in brain frontal lobe.    30   0.42   3
CJ450075|CJ450075.1 Macaca fascicularis mRNA, clone: QflA-15619, 5' end, expressed in brain frontal lobe.    30   0.48   3
AC138190|AC138190.1 Mus musculus clone RP23-224G5, LOW-PASS SEQUENCE SAMPLING.    36   0.69   2
CJ450403|CJ450403.1 Macaca fascicularis mRNA, clone: QflA-15964, 5' end, expressed in brain frontal lobe.    44   0.79   1
CJ453825|CJ453825.1 Macaca fascicularis mRNA, clone: QflA-19540, 5' end, expressed in brain frontal lobe.    30   1.5    3
CJ491071|CJ491071.1 Macaca fascicularis mRNA, clone: QtsA-18888, 5' end, expressed in testis.    42   3.1    1
CJ467766|CJ467766.1 Macaca fascicularis mRNA, clone: QnpA-17354, 5' end, expressed in brain parietal lobe.    42   3.1    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 45,481,614

 psg: 0.69  gvh: 0.06  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 1.42  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CHP171 is nuc

>CHP171F.Seq
CTGTTGGCCTACTGGNAAAAATATAATTAACATNCTAAAAATAAACCAAAAAAAAACAAT
TTTATTTATTAAGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAAAAAAAAA
AAAAAAAAAAAAATTTTNNNTTTTTTTAANNAAAAAANNNNNNNNNN