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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP169
Library CH
(Link to library)
Clone ID CHP169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHP169P
(Link to Original site)
Representative DNA sequence 
>CHP169 (CHP169Q) /CSM/CH/CHP1-C/CHP169Q.Seq.d/
CTGTTGGCCTACTGGGAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAA
ATATATAAAGNATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAA
TTTTTTTTTTTNAAXXXXXXXXXXTATGAAGGTGAACGTGCTATGACCAAAGATAATAAT
TTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTT
GAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGCATCAGCTGAAGATAAATCA
ACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAA
ATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACCACAAGATGAACAACAAAAAGAT
CGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAA
GATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACT
GAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGAT
AAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCAT
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgnsvvqfnl*****ykyikx*ffci*ifvnk*INNNFFFX---

---YEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNASAEDKSTGNKQ
KITITNDKGRLSKEEIEKMVADAEKFKPQDEQQKDRVESKNKLENYAFTVKNSIKDEKVA
AKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPI
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywefsssi*fiiiiiv*iykxliflyinfck*ink**fffx---

---YEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNASAEDKSTGNKQ
KITITNDKGRLSKEEIEKMVADAEKFKPQDEQQKDRVESKNKLENYAFTVKNSIKDEKVA
AKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPI

Frame B:
cwptgnsvvqfnl*****ykyikx*ffci*ifvnk*INNNFFFX---

---mkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*mhqlkinqlvtnk
rlqlpmikvvfqkkklkkwllmqrnsnhkmnnkkivlnqrinwkimhsllkiqlkmkklq
pkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs

Frame C:
vgllgiq*fnliynnnnsini*xinffvykfl*ink*iiifffx---

---*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis*r*inw*qtk
dynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*kfn*r*kscs
qnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP169 (CHP169Q) /CSM/CH/CHP1-C/CHP169Q.Seq.d/                        979   0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                        963   0.0
VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/                        963   0.0
VHP873 (VHP873Q) /CSM/VH/VHP8-D/VHP873Q.Seq.d/                        963   0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/                        963   0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/                        963   0.0
VHP627 (VHP627Q) /CSM/VH/VHP6-B/VHP627Q.Seq.d/                        963   0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/                        963   0.0
VHP420 (VHP420Q) /CSM/VH/VHP4-A/VHP420Q.Seq.d/                        963   0.0
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/                        963   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   963   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   955   0.0    1
CJ378579|CJ378579.1 Molgula tectiformis cDNA, gastrula/neurula clone:mtga005e17, 3' end.   113   5e-35  3
DQ060426|DQ060426.1 Cryptosporidium andersoni strain zzca heat shock protein 70-like gene, partial sequence.    88   3e-33  3
AY954892|AY954892.1 Cryptosporidium andersoni strain HenanZhzhca heat shock protein 70 gene, partial cds.    88   3e-33  3
AY954894|AY954894.1 Cryptosporidium andersoni strain bjcm heat shock protein 70 gene, partial cds.    88   3e-33  3
AY954893|AY954893.1 Cryptosporidium andersoni strain changchunca heat shock protein 70 gene, partial cds.    88   3e-33  3
AF221542|AF221542.1 Cryptosporidium muris isolate 589 heat shock protein 70 (HSP70) gene, partial cds.    88   3e-33  3
CJ391056|CJ391056.1 Molgula tectiformis cDNA, gonad clone:mtgd015j13, 5' end.   105   8e-33  3
CJ405006|CJ405006.1 Molgula tectiformis cDNA, gonad clone:mtgd022b20, 3' end.   105   1e-32  3
dna update 2005. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   317   1e-85
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   317   1e-85
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           251   2e-65
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   246   3e-64
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   246   4e-64
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   245   8e-64
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   245   8e-64
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   244   1e-63
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   243   3e-63
AC147536_23(AC147536|pid:none) Medicago truncatula clone mth2-9l...   243   3e-63
protein update 2009. 4.10
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHP169 is cyt
5' end seq. ID CHP169F
5' end seq. 
>CHP169F.Seq
CTGTTGGCCTACTGGGAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAA
ATATATAAAGNATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAA
TTTTTTTTTTTNAANNNNNNNNNN
Length of 5' end seq. 144
3' end seq. ID CHP169Z
3' end seq. 
>CHP169Z.Seq
NNNNNNNNNNTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATT
TGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGA
TGTTGATGCAAATGGTATCTTAAATGCATCAGCTGAAGATAAATCAACTGGTAACAAACA
AAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGT
TGCTGATGCAGAGAAATTCAAACCACAAGATGAACAACAAAAAGATCGTGTTGAATCAAA
GAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGC
AGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAA
ATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTT
AGAAGCAGTTGTCAATCCAATCAT
Length of 3' end seq. 504
Connected seq. ID CHP169P
Connected seq. 
>CHP169P.Seq
CTGTTGGCCTACTGGGAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAA
ATATATAAAGNATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAA
TTTTTTTTTTTNAA----------TATGAAGGTGAACGTGCTATGACCAAAGATAATAAT
TTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTT
GAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGCATCAGCTGAAGATAAATCA
ACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAA
ATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACCACAAGATGAACAACAAAAAGAT
CGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAA
GATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACT
GAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGAT
AAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCAT
Length of connected seq. 628
Full length Seq ID -
Full length Seq. -
Length of full length seq. -