CHP164
Library CH
(Link to library)
Clone ID CHP164
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID CHP164P
(Link to Original site)
Representative DNA sequence
>CHP164 (CHP164Q) /CSM/CH/CHP1-C/CHP164Q.Seq.d/
CTGTTGGCCTACTGGTAGAATCTCATATAAGAATTGAAACATCTTTGGCATTCAAGTGTC
CTCGATATGATGAATGTGGTGTCTGTGAAGGTGATGGTACTTCTTGTTGTACTCCAAATA
ATTGTGATAATAATCCAATTTATAGAACCAACTGTATAACAGCAAAATGTTCAAATAATG
TTTGCGTTACTTCAGCACCATATTGCAGTTCAACCGAACCATGTACAGTTGGTCTTTGTA
CACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAATTGTGTAAATGAAAATCATTGTACCC
AGGATTCATGTAATTCAACTATAAATGCTTGCCAACATGATCCAATTCCAGATTGTATCA
ATTGTGCCTATATTGGTTGTATCACTACTGATTATTGTAATGAACAAGTATGTTCAGCTG
ATGGAAGATCATGTGAAACTAGACCAAAGAATTGTGATGATTTAAATTTTTGTACTGTTG
ATACATGTTCAAATGGAGTTTGCATTTACACAAGAATTGATAATTGTGTAAATTGTACAG
GTCCAGGTATTGGTTGTATTACTACTGATCAATGTAATCCAAATGTATGTTCTCCAGATG
GTAATTCATGTATCATTCAACCAAAGAATTGTXXXXXXXXXXGGAGATGTTTGTACAACA
GTTCCCATTGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATTGGACCAAT
GGGTGTTTGTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTGGAACCATG
TATTACAACAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGTATCCAAGA
GACAATTGAAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGCACAGGAGT
AGGTTGTGAACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATTGGTTGTAC
AACACCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTTGTCT
TACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATAC
TGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGG
TGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAAT
TGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGG
TGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCA
TTACACAGANNCAGGTNACAGGTA
sequence update 2002.10.25
Translated Amino Acid sequence
VGLLVESHIRIETSLAFKCPRYDECGVCEGDGTSCCTPNNCDNNPIYRTNCITAKCSNNV
CVTSAPYCSSTEPCTVGLCTPGVGCSVVPKNCVNENHCTQDSCNSTINACQHDPIPDCIN
CAYIGCITTDYCNEQVCSADGRSCETRPKNCDDLNFCTVDTCSNGVCIYTRIDNCVNCTG
PGIGCITTDQCNPNVCSPDGNSCIIQPKNC---

---EMFVQQFPLNCDDGLQCTVDSCIGPMGVCSHIAIAPKCLECALEPCITTDNCQPVIC
GPDGRCIQETIEDFCDDYNYCTVDTCTGVGCEHASISGCRNCTNGIGCTTPSDDACNLQV
CSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVS
QVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTXXGXR


Translated Amino Acid sequence (All Frames)
Frame A:
llayw*nli*elkhlwhssvldmmnvvsvkvmvllvvlqiiviiiqfieptv*qqnvqim
fallqhhiavqpnhvqlvfvhqvlvvqlfqkiv*mkiivprihviql*mlanmiqfqivs
ivpilvvslliivmnkyvqlmedhvkldqrivmi*ifvllihvqmefaftqeliiv*ivq
vqvlvvlllinviqmyvlqmvihvsfnqri---

---gdvcttvpiel**wltvys**lywtngcl*sysyctkmfrmrigtmyynr*lstsyl
wsrwtlyprdn*rfl**l*llhc*ymhrsrl*tcfnfrls*lykwnwlyntir*cm*fts
mf*nwr*lsyngfkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywci
ts*v*llsnwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhrxrxqv

Frame B:
cwptgrisykn*nifgiqvssi**mwcl*r*wyfllysk*l***snl*nqlynskmfk*c
lryfstilqfnrtmyswslytrcwlfscskklck*kslypgfm*fnykclpt*snsrlyq
lclywlyhy*ll**tsmfs*wkim*n*tkel**fkflyc*ymfkwslhlhkn**lcklyr
srywlyyy*sm*skcmfsrw*fmyhstkel---

---EMFVQQFPLNCDDGLQCTVDSCIGPMGVCSHIAIAPKCLECALEPCITTDNCQPVIC
GPDGRCIQETIEDFCDDYNYCTVDTCTGVGCEHASISGCRNCTNGIGCTTPSDDACNLQV
CSETGDSCLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVS
QVECDCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTXXGXR

Frame C:
VGLLVESHIRIETSLAFKCPRYDECGVCEGDGTSCCTPNNCDNNPIYRTNCITAKCSNNV
CVTSAPYCSSTEPCTVGLCTPGVGCSVVPKNCVNENHCTQDSCNSTINACQHDPIPDCIN
CAYIGCITTDYCNEQVCSADGRSCETRPKNCDDLNFCTVDTCSNGVCIYTRIDNCVNCTG
PGIGCITTDQCNPNVCSPDGNSCIIQPKNC---

---rclynssh*ivmmaysvqlivvldqwvfvvi*llhqnv*nahwnhvlqqiivnqlfv
vqmdvvskrqlkifvmiiiiallihaqe*vvnmlqfqvvvivqmelvvqhhqmmhviyky
vlkleivvlqwf*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyh
klsvivvqlvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqxqvtg

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP164 (CHP164Q) /CSM/CH/CHP1-C/CHP164Q.Seq.d/ 2587 0.0
CHF375 (CHF375Q) /CSM/CH/CHF3-D/CHF375Q.Seq.d/ 1340 0.0
CHR682 (CHR682Q) /CSM/CH/CHR6-D/CHR682Q.Seq.d/ 1217 0.0
AHA224 (AHA224Q) /CSM/AH/AHA2-A/AHA224Q.Seq.d/ 1217 0.0
SHA693 (SHA693Q) /CSM/SH/SHA6-D/SHA693Q.Seq.d/ 1201 0.0
CHG401 (CHG401Q) /CSM/CH/CHG4-A/CHG401Q.Seq.d/ 1164 0.0
CHN684 (CHN684Q) /CSM/CH/CHN6-D/CHN684Q.Seq.d/ 1148 0.0
CHS472 (CHS472Q) /CSM/CH/CHS4-C/CHS472Q.Seq.d/ 1134 0.0
CHN234 (CHN234Q) /CSM/CH/CHN2-B/CHN234Q.Seq.d/ 1114 0.0
SHD255 (SHD255Q) /CSM/SH/SHD2-C/SHD255Q.Seq.d/ 1110 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CR392341|CR392341.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-222E20. 38 0.16 10
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 36 0.28 29
BW638496|BW638496.1 Dugesia ryukyuensis mRNA, clone: Dr_sW_011_M10, 5' mRNA sequence. 38 0.43 3
X78948|X78948.1 D.minutum ecmB gene. 38 0.72 3
AC023141|AC023141.6 Homo sapiens BAC clone RP11-548K12 from 7, complete sequence. 44 1.0 5
BX571716|BX571716.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-148L14. 38 1.3 8
BX005430|BX005430.14 Zebrafish DNA sequence from clone DKEY-19E4 in linkage group 6. 38 1.3 10
BX957269|BX957269.5 Zebrafish DNA sequence from clone CH211-12C22 in linkage group 6. 38 1.4 7
CR481707|CR481707.1 mth2-145A12FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula. 38 1.6 2
AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence. 46 1.8 1
dna update 2005. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 473 e-158
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 252 9e-86
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 96 6e-38
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 96 6e-38
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 80 1e-27
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 119 2e-25
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 96 2e-24
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 72 6e-24
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 109 2e-22
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 87 3e-21
protein update 2009. 4.10
PSORT

psg: 0.71 gvh: 0.36 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for CHP164 is cyt

5' end seq. ID CHP164F
5' end seq.
>CHP164F.Seq
CTGTTGGCCTACTGGTAGAATCTCATATAAGAATTGAAACATCTTTGGCATTCAAGTGTC
CTCGATATGATGAATGTGGTGTCTGTGAAGGTGATGGTACTTCTTGTTGTACTCCAAATA
ATTGTGATAATAATCCAATTTATAGAACCAACTGTATAACAGCAAAATGTTCAAATAATG
TTTGCGTTACTTCAGCACCATATTGCAGTTCAACCGAACCATGTACAGTTGGTCTTTGTA
CACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAATTGTGTAAATGAAAATCATTGTACCC
AGGATTCATGTAATTCAACTATAAATGCTTGCCAACATGATCCAATTCCAGATTGTATCA
ATTGTGCCTATATTGGTTGTATCACTACTGATTATTGTAATGAACAAGTATGTTCAGCTG
ATGGAAGATCATGTGAAACTAGACCAAAGAATTGTGATGATTTAAATTTTTGTACTGTTG
ATACATGTTCAAATGGAGTTTGCATTTACACAAGAATTGATAATTGTGTAAATTGTACAG
GTCCAGGTATTGGTTGTATTACTACTGATCAATGTAATCCAAATGTATGTTCTCCAGATG
GTAATTCATGTATCATTCAACCAAAGAATTGTNNNNNNNNNN
Length of 5' end seq. 642
3' end seq. ID CHP164Z
3' end seq.
>CHP164Z.Seq
NNNNNNNNNNGGAGATGTTTGTACAACAGTTCCCATTGAATTGTGATGATGGCTTACAGT
GTACAGTTGATAGTTGTATTGGACCAATGGGTGTTTGTAGTCATATAGCTATTGCACCAA
AATGTTTAGAATGCGCATTGGAACCATGTATTACAACAGATAATTGTCAACCAGTTATTT
GTGGTCCAGATGGACGTTGTATCCAAGAGACAATTGAAGATTTTTGTGATGATTATAATT
ATTGCACTGTTGATACATGCACAGGAGTAGGTTGTGAACATGCTTCAATTTCAGGTTGTC
GTAATTGTACAAATGGAATTGGTTGTACAACACCATCAGATGATGCATGTAATTTACAAG
TATGTTCTGAAACTGGAGATAGTTGTCTTACAATGGTTTTAAATTGTGATGATAATAACG
ATTGTACTGAAGATAAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGACGGTT
GTGTTACACCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTAT
CACAAGTTGAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATG
AAATTTGTATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTG
GTACAACAACTGGCAGGGCTACAGGTCATTACACAGANNCAGGTNACAGGTA
Length of 3' end seq. 712
Connected seq. ID CHP164P
Connected seq.
>CHP164P.Seq
CTGTTGGCCTACTGGTAGAATCTCATATAAGAATTGAAACATCTTTGGCATTCAAGTGTC
CTCGATATGATGAATGTGGTGTCTGTGAAGGTGATGGTACTTCTTGTTGTACTCCAAATA
ATTGTGATAATAATCCAATTTATAGAACCAACTGTATAACAGCAAAATGTTCAAATAATG
TTTGCGTTACTTCAGCACCATATTGCAGTTCAACCGAACCATGTACAGTTGGTCTTTGTA
CACCAGGTGTTGGTTGTTCAGTTGTTCCAAAAAATTGTGTAAATGAAAATCATTGTACCC
AGGATTCATGTAATTCAACTATAAATGCTTGCCAACATGATCCAATTCCAGATTGTATCA
ATTGTGCCTATATTGGTTGTATCACTACTGATTATTGTAATGAACAAGTATGTTCAGCTG
ATGGAAGATCATGTGAAACTAGACCAAAGAATTGTGATGATTTAAATTTTTGTACTGTTG
ATACATGTTCAAATGGAGTTTGCATTTACACAAGAATTGATAATTGTGTAAATTGTACAG
GTCCAGGTATTGGTTGTATTACTACTGATCAATGTAATCCAAATGTATGTTCTCCAGATG
GTAATTCATGTATCATTCAACCAAAGAATTGT----------GGAGATGTTTGTACAACA
GTTCCCATTGAATTGTGATGATGGCTTACAGTGTACAGTTGATAGTTGTATTGGACCAAT
GGGTGTTTGTAGTCATATAGCTATTGCACCAAAATGTTTAGAATGCGCATTGGAACCATG
TATTACAACAGATAATTGTCAACCAGTTATTTGTGGTCCAGATGGACGTTGTATCCAAGA
GACAATTGAAGATTTTTGTGATGATTATAATTATTGCACTGTTGATACATGCACAGGAGT
AGGTTGTGAACATGCTTCAATTTCAGGTTGTCGTAATTGTACAAATGGAATTGGTTGTAC
AACACCATCAGATGATGCATGTAATTTACAAGTATGTTCTGAAACTGGAGATAGTTGTCT
TACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATAC
TGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGG
TGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAAT
TGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGG
TGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCA
TTACACAGANNCAGGTNACAGGTA
Length of connected seq. 1334
Full length Seq ID -
Full length Seq. -
Length of full length seq. -