>CHP163 (CHP163Q) /CSM/CH/CHP1-C/CHP163Q.Seq.d/
TGTTGGCCTACTGGAAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAA
GTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAX
XXXXXXXXX

VGLLENLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---

Frame A:
cwptgkftik*lfflfflfkv*iieiikinikkker*kk---


Frame B:
VGLLENLLSNNYFFFSFFLKFK**k**klilkkrnvkkk---


Frame C:
laywkiyyqitifsflsf*slnnrnnkn*y*kkgtlkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP163 (CHP163Q) /CSM/CH/CHP1-C/CHP163Q.Seq.d/                         72   2e-12
SHK493 (SHK493Q) /CSM/SH/SHK4-D/SHK493Q.Seq.d/                         66   1e-10
SHJ261 (SHJ261Q) /CSM/SH/SHJ2-C/SHJ261Q.Seq.d/                         66   1e-10
SHB221 (SHB221Q) /CSM/SH/SHB2-A/SHB221Q.Seq.d/                         60   8e-09
SHK380 (SHK380Q) /CSM/SH/SHK3-D/SHK380Q.Seq.d/                         58   3e-08
SHK490 (SHK490Q) /CSM/SH/SHK4-D/SHK490Q.Seq.d/                         56   1e-07
SHB133 (SHB133Q) /CSM/SH/SHB1-B/SHB133Q.Seq.d/                         56   1e-07
CHM743 (CHM743Q) /CSM/CH/CHM7-B/CHM743Q.Seq.d/                         56   1e-07
AHM142 (AHM142Q) /CSM/AH/AHM1-B/AHM142Q.Seq.d/                         56   1e-07
SHK173 (SHK173Q) /CSM/SH/SHK1-D/SHK173Q.Seq.d/                         54   5e-07

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ476374|CJ476374.1 Macaca fascicularis mRNA, clone: QtrA-10580, 5' end, expressed in brain temporal lobe.    46   0.15   1
CJ465301|CJ465301.1 Macaca fascicularis mRNA, clone: QnpA-14369, 5' end, expressed in brain parietal lobe.    46   0.15   1
CJ467814|CJ467814.1 Macaca fascicularis mRNA, clone: QnpA-17441, 5' end, expressed in brain parietal lobe.    42   0.23   2
BD099582|BD099582.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    44   0.59   1
BD019644|BD019644.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    44   0.59   1
CJ443499|CJ443499.1 Macaca fascicularis mRNA, clone: QccE-21059, 5' end, expressed in cerebellum cortex.    44   0.59   1
CJ448704|CJ448704.1 Macaca fascicularis mRNA, clone: QflA-14087, 5' end, expressed in brain frontal lobe.    44   0.59   1
CJ453331|CJ453331.1 Macaca fascicularis mRNA, clone: QflA-19026, 5' end, expressed in brain frontal lobe.    36   0.84   2
CJ465160|CJ465160.1 Macaca fascicularis mRNA, clone: QnpA-14186, 5' end, expressed in brain parietal lobe.    42   2.3    1
CJ457198|CJ457198.1 Macaca fascicularis mRNA, clone: QflA-23069, 5' end, expressed in brain frontal lobe.    42   2.3    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 56,513,727

 psg: 0.75  gvh: 0.18  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHP163 is cyt

>CHP163F.Seq
TGTTGGCCTACTGGAAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAA
GTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAN
NNNNNNNNN