CHP162
Library CH
(Link to library)
Clone ID CHP162
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHP162 (CHP162Q) /CSM/CH/CHP1-C/CHP162Q.Seq.d/
ACTGTTGGCCTACTGGGTCAATAGTAATAAATACATTTTTTTCTTTATTTTTTTTTTATT
AAATAAAATATATAGTAACATTAGNATTAGTAATAATATAATATAATATTACAAAAGGAA
AATTTATTTTTTATCAAANAAGANAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LLAYWVNSNKYIFFFIFFLLNKIYSNIXISNNII*yykrkiyflsxkxkk---


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllgq***ihfflyfffik*ni**h*x***yniilqkenlffikxxkk---


Frame B:
LLAYWVNSNKYIFFFIFFLLNKIYSNIXISNNII*yykrkiyflsxkxkk---


Frame C:
cwptgsivintffslfffy*ikyivtlxlvii*ynitkgkfifyqxrxk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP162 (CHP162Q) /CSM/CH/CHP1-C/CHP162Q.Seq.d/ 70 1e-11
AFJ578 (AFJ578Q) /CSM/AF/AFJ5-D/AFJ578Q.Seq.d/ 52 2e-06
AFH677 (AFH677Q) /CSM/AF/AFH6-D/AFH677Q.Seq.d/ 48 4e-05
CFA779 (CFA779Q) /CSM/CF/CFA7-D/CFA779Q.Seq.d/ 46 2e-04
CHF874 (CHF874Q) /CSM/CH/CHF8-D/CHF874Q.Seq.d/ 44 6e-04
SHK565 (SHK565Q) /CSM/SH/SHK5-C/SHK565Q.Seq.d/ 44 6e-04
SFI774 (SFI774Q) /CSM/SF/SFI7-D/SFI774Q.Seq.d/ 44 6e-04
SFI124 (SFI124Q) /CSM/SF/SFI1-A/SFI124Q.Seq.d/ 44 6e-04
SFF750 (SFF750Q) /CSM/SF/SFF7-C/SFF750Q.Seq.d/ 44 6e-04

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CJ447818|CJ447818.1 Macaca fascicularis mRNA, clone: QflA-13165, 5' end, expressed in brain frontal lobe. 42 0.007 2
CJ452942|CJ452942.1 Macaca fascicularis mRNA, clone: QflA-18621, 5' end, expressed in brain frontal lobe. 40 0.027 2
DN574014|DN574014.1 92314356 Sea Urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PMCSPR2-188J6 3', mRNA sequence. 40 0.036 2
CJ482303|CJ482303.1 Macaca fascicularis mRNA, clone: QtrA-18183, 5' end, expressed in brain temporal lobe. 34 0.100 2
CJ447267|CJ447267.1 Macaca fascicularis mRNA, clone: QflA-12589, 5' end, expressed in brain frontal lobe. 34 0.38 2
CJ479400|CJ479400.1 Macaca fascicularis mRNA, clone: QtrA-14677, 5' end, expressed in brain temporal lobe. 44 0.76 1
CJ465451|CJ465451.1 Macaca fascicularis mRNA, clone: QnpA-14552, 5' end, expressed in brain parietal lobe. 44 0.76 1
CJ473830|CJ473830.1 Macaca fascicularis mRNA, clone: QorA-13876, 5' end, expressed in brain occipital lobe. 44 0.76 1
CJ474479|CJ474479.1 Macaca fascicularis mRNA, clone: QorA-14586, 5' end, expressed in brain occipital lobe. 44 0.76 1
CJ436211|CJ436211.1 Macaca fascicularis mRNA, clone: QccE-13291, 5' end, expressed in cerebellum cortex. 44 0.76 1
dna update 2005. 9.17
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 118,733,154
protein update 2009. 4.10
PSORT

psg: 1.04 gvh: 0.57 alm: 0.36 top: 0.60 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: extracellular, including cell wall
24.0 %: mitochondrial
20.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for CHP162 is exc

5' end seq. ID CHP162F
5' end seq.
>CHP162F.Seq
ACTGTTGGCCTACTGGGTCAATAGTAATAAATACATTTTTTTCTTTATTTTTTTTTTATT
AAATAAAATATATAGTAACATTAGNATTAGTAATAATATAATATAATATTACAAAAGGAA
AATTTATTTTTTATCAAANAAGANAAAAAAAANNNNNNNNNN
Length of 5' end seq. 162
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -