CHP159
Library CH
(Link to library)
Clone ID CHP159
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15743-1
Original site URL
Representative seq. ID CHP159P
(Link to Original site)
Representative DNA sequence
>CHP159 (CHP159Q) /CSM/CH/CHP1-C/CHP159Q.Seq.d/
CTGTTGGCCTACTGGCACATCCACCAAGNATTTGAGTTTAGATCAAGTATCCCTGATAGT
TTCAATCGTATTCCATCACCACGTAGAATCCTCAAAGAGGTTGCAAAACCAAAGNAAAGT
CAATCAAGCTGGTAGTTTGGTTAAAAAAGAGAATTTATTAGCACTCATTAAAATCCTACA
CTTTGATCAATCCATCAATAGACAACAATTAAATAGTATTCTCGTTCAAATTTGCACATT
TTCTGATAATCGTGAAGAGTTGTTATGTTATATCCTTCAAATTTTAACCGGTTACCAATC
AATTGTTTCTCAACAACCCCAAAGAAAAACCGCTGAATCTGATAAATTCTCACCAATCAC
TGATCCATGTCACCCATTAATGAGATTCCGTATGTTTAGATCATTCGAAGTGACAAATCA
TCCACCATTATTGGTCGTTAAGAGATTATTGGATATTCTTCAAAGTTTAACCACAGGTAA
TAGTTTAACCGTCAATTGGATGTTAACTCCTCAACCAATCGTACCTTCCACTCAATCACA
AAATAGTCATGGAAAAGAGAAAGATGATGGATCTGGTTCAACAAGTCCATCCCTCGAAAA
GGCCTGTCCACTTTGGAAATTATGTGATGCATTGAATGATAAAXXXXXXXXXXCAATCAA
TGTTAGCGATATGGAGGCAATTGACCCAACTTATCATAAGAATCTTTTATGGATTCTTGA
TAATGATATCACCAATGTCATGGAACTCACATTTAGTACAGAGATCGATATTTTCGATTC
CATGAAAGTTATCGAATTGAAACCAAATGGTGCAAACATTCCTGTCACTGAAGATAATAA
ATTAGAATATGTTCGTTTGGTTGCTTCCGTTAGAATGACAAACTCAATCAAGGATCAAAT
CAATAGCTTCTTAGAAGGTTTCCACGAACTCATTCCAAAATCATTGATTGGTATTTTCAA
TGAAATGGAGTTGGAATTATTGATCAGTGGTCTTCCAGAGATTGATATCGATGATCTTCG
TGCAAACACTGAATATAGTGGTTACTCTTCCGATTCTCAACAAATCCTTTGGTTCTGGAA
TACTGTTTCAAACTTTTCAAATGAAGAAAAAGCTTCACTCTTACAATTTGTCACTGGTAC
AAGTAAAGTACCTTTGGAAGGTTTCAAAGCTTTAGGTGGTATGGGAGGCCCTCAAAAATT
CCAAATTCATAGAATCAGAGGTAATGCTCACAGATTACCAACCGCTCACACATGTTTCAA
TCAATTGGATATACCAGAATATGAATNCTCAAGAACAATTGAAAAAATTATTAAAAATTG
CAATTGGTGAAGNCTCAGAAGGTTTGGTTTTGTAAGNATATATATAAAAAAAAAAAAAAT
AAAANA
sequence update 2002.10.25
Translated Amino Acid sequence
CWPTGTSTKXLSLDQVSLIVSIVFHHHVESSKRLQNQXKVNQAGSLVKKENLLALIKILH
FDQSINRQQLNSILVQICTFSDNREELLCYILQILTGYQSIVSQQPQRKTAESDKFSPIT
DPCHPLMRFRMFRSFEVTNHPPLLVVKRLLDILQSLTTGNSLTVNWMLTPQPIVPSTQSQ
NSHGKEKDDGSGSTSPSLEKACPLWKLCDALNDK---

---INVSDMEAIDPTYHKNLLWILDNDITNVMELTFSTEIDIFDSMKVIELKPNGANIPV
TEDNKLEYVRLVASVRMTNSIKDQINSFLEGFHELIPKSLIGIFNEMELELLISGLPEID
IDDLRANTEYSGYSSDSQQILWFWNTVSNFSNEEKASLLQFVTGTSKVPLEGFKALGGMG
GPQKFQIHRIRGNAHRLPTAHTCFNQLDIPEYEXSRTIEKIIKNCNW*xlrrfgfvxiyi
kkkkik


Translated Amino Acid sequence (All Frames)
Frame A:
llaywhihqxfefrssipdsfnripsprrilkevakpkxsqssw*fg*krefisth*npt
l*sihq*ttik*ysrsnlhif**s*rvvmlypsnfnrlpincfsttpkknr*i**iltnh
*smspineipyv*iirsdksstiigr*eiigysskfnhr**fnrqldvnsstnrtfhsit
k*swkrer*wiwfnksiprkglstleim*cie**---

---qsmlaiwrqltqliirifygflimispmswnshlvqrsifsip*klsn*nqmvqtfl
slkiin*nmfvwllple*qtqsriksias*kvstnsfqnh*lvfsmkwswny*svvfqrl
ismifvqtlnivvtlpilnksfgsgilfqtfqmkkklhsynlslvqvkylwkvskl*vvw
ealknskfiesevmltdyqplthvsinwiyqnmnxqeqlkkllkiaigexseglvl*xyi
*kkkk*x

Frame B:
CWPTGTSTKXLSLDQVSLIVSIVFHHHVESSKRLQNQXKVNQAGSLVKKENLLALIKILH
FDQSINRQQLNSILVQICTFSDNREELLCYILQILTGYQSIVSQQPQRKTAESDKFSPIT
DPCHPLMRFRMFRSFEVTNHPPLLVVKRLLDILQSLTTGNSLTVNWMLTPQPIVPSTQSQ
NSHGKEKDDGSGSTSPSLEKACPLWKLCDALNDK---

---nqc*ryggn*pnls*esfmds***yhqchgthi*yrdryfrfhesyrietkwckhsc
h*r**iricsfgcfr*ndklnqgsnq*llrrfprthskiidwyfq*ngvgiidqwssrd*
yr*ssckh*i*wllfrfstnplvleycfklfk*rksftltichwyk*stfgrfqsfrwyg
rpskipns*nqr*csqitnrshmfqsigytri*xlknn*kny*klqlvkxqkvwfckxiy
kkkknkx

Frame C:
vgllahppxi*v*ikyp**fqsysitt*npqrgcktkxksiklvvwlkkriy*hslksyt
linpsidnn*ivfsfkfahfliivkscyvisfkf*pvtnqlflnnpkekplnlinshqsl
ihvth**dsvcldhsk*qiihhywslrdywiffkv*pqviv*psigc*llnqsylplnhk
ivmekrkmmdlvqqvhpskrpvhfgnyvmh*mi---

---INVSDMEAIDPTYHKNLLWILDNDITNVMELTFSTEIDIFDSMKVIELKPNGANIPV
TEDNKLEYVRLVASVRMTNSIKDQINSFLEGFHELIPKSLIGIFNEMELELLISGLPEID
IDDLRANTEYSGYSSDSQQILWFWNTVSNFSNEEKASLLQFVTGTSKVPLEGFKALGGMG
GPQKFQIHRIRGNAHRLPTAHTCFNQLDIPEYEXSRTIEKIIKNCNW*xlrrfgfvxiyi
kkkkik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP159 (CHP159Q) /CSM/CH/CHP1-C/CHP159Q.Seq.d/ 2617 0.0
VHD545 (VHD545Q) /CSM/VH/VHD5-B/VHD545Q.Seq.d/ 1352 0.0
AHD357 (AHD357Q) /CSM/AH/AHD3-C/AHD357Q.Seq.d/ 1338 0.0
AHN865 (AHN865Q) /CSM/AH/AHN8-C/AHN865Q.Seq.d/ 1324 0.0
SHD335 (SHD335Q) /CSM/SH/SHD3-B/SHD335Q.Seq.d/ 1322 0.0
VHL609 (VHL609Q) /CSM/VH/VHL6-A/VHL609Q.Seq.d/ 1304 0.0
SLG336 (SLG336Q) /CSM/SL/SLG3-B/SLG336Q.Seq.d/ 1152 0.0
FCL-AD09 (FCL-AD09Q) /CSM/FCL/FCL-AD/FCL-AD09Q.Seq.d/ 1082 0.0
AHO166 (AHO166Q) /CSM/AH/AHO1-C/AHO166Q.Seq.d/ 325 1e-87
SLD895 (SLD895Q) /CSM/SL/SLD8-D/SLD895Q.Seq.d/ 244 3e-63

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

DT603335|DT603335.1 she01-17ms3-e08 She01 Saruma henryi cDNA clone she01-17ms3-e08 5', mRNA sequence. 60 3e-10 2
CN520551|CN520551.1 GQ0106.B3_F09 GQ010 Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA clone GQ0106_F09 5', mRNA sequence. 60 6e-08 2
CV227274|CV227274.1 WS0166.B21_L09 PT-DX-A-7 Populus balsamifera subsp. trichocarpa cDNA clone WS0166_L09 3', mRNA sequence. 60 6e-08 2
CF442604|CF442604.1 EST678949 normalized cDNA library of onion Allium cepa cDNA clone ACAFX27, mRNA sequence. 60 2e-07 2
CA990772|CA990772.1 EST644280 GESD Medicago truncatula cDNA clone GESD-29H16, mRNA sequence. 42 2e-05 3
AV777002|AV777002.1 Lotus corniculatus var. japonicus cDNA clone:MPDL010a06_f, 3' end. 42 2e-05 3
CX533032|CX533032.1 s13dNF89F02MJ015_272341 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence. 42 2e-05 3
BG454763|BG454763.1 NF104H08LF1F1073 Developing leaf Medicago truncatula cDNA clone NF104H08LF 5', mRNA sequence. 42 3e-05 3
BQ165617|BQ165617.1 EST611486 KVKC Medicago truncatula cDNA clone pKVKC-10E6, mRNA sequence. 42 4e-05 3
CA921997|CA921997.1 EST639715 MTUS Medicago truncatula cDNA clone MTUS-47D1, mRNA sequence. 42 4e-05 3
dna update 2005. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9P4Z1) RecName: Full=E3 ubiquitin-protein ligase TOM1-like; ... 278 2e-73
T49799(T49799)related to TOM1 protein [imported] - Neurospora cr... 278 2e-73
CU638743_614(CU638743|pid:none) Podospora anserina genomic DNA c... 278 3e-73
AM270079_31(AM270079|pid:none) Aspergillus niger contig An04c018... 273 1e-71
AP008218_762(AP008218|pid:none) Oryza sativa (japonica cultivar-... 268 4e-70
(Q8GY23) RecName: Full=E3 ubiquitin-protein ligase UPL1; ... 266 1e-69
AM452363_7(AM452363|pid:none) Vitis vinifera contig VV78X124349.... 264 5e-69
(Q8H0T4) RecName: Full=E3 ubiquitin-protein ligase UPL2; ... 263 1e-68
AP005590_16(AP005590|pid:none) Oryza sativa Japonica Group genom... 263 1e-68
AK230373_1(AK230373|pid:none) Arabidopsis thaliana mRNA for hypo... 263 1e-68
protein update 2009. 4.10
PSORT

psg: 0.71 gvh: 0.56 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHP159 is cyt

5' end seq. ID CHP159F
5' end seq.
>CHP159F.Seq
CTGTTGGCCTACTGGCACATCCACCAAGNATTTGAGTTTAGATCAAGTATCCCTGATAGT
TTCAATCGTATTCCATCACCACGTAGAATCCTCAAAGAGGTTGCAAAACCAAAGNAAAGT
CAATCAAGCTGGTAGTTTGGTTAAAAAAGAGAATTTATTAGCACTCATTAAAATCCTACA
CTTTGATCAATCCATCAATAGACAACAATTAAATAGTATTCTCGTTCAAATTTGCACATT
TTCTGATAATCGTGAAGAGTTGTTATGTTATATCCTTCAAATTTTAACCGGTTACCAATC
AATTGTTTCTCAACAACCCCAAAGAAAAACCGCTGAATCTGATAAATTCTCACCAATCAC
TGATCCATGTCACCCATTAATGAGATTCCGTATGTTTAGATCATTCGAAGTGACAAATCA
TCCACCATTATTGGTCGTTAAGAGATTATTGGATATTCTTCAAAGTTTAACCACAGGTAA
TAGTTTAACCGTCAATTGGATGTTAACTCCTCAACCAATCGTACCTTCCACTCAATCACA
AAATAGTCATGGAAAAGAGAAAGATGATGGATCTGGTTCAACAAGTCCATCCCTCGAAAA
GGCCTGTCCACTTTGGAAATTATGTGATGCATTGAATGATAAANNNNNNNNNN
Length of 5' end seq. 653
3' end seq. ID CHP159Z
3' end seq.
>CHP159Z.Seq
NNNNNNNNNNCAATCAATGTTAGCGATATGGAGGCAATTGACCCAACTTATCATAAGAAT
CTTTTATGGATTCTTGATAATGATATCACCAATGTCATGGAACTCACATTTAGTACAGAG
ATCGATATTTTCGATTCCATGAAAGTTATCGAATTGAAACCAAATGGTGCAAACATTCCT
GTCACTGAAGATAATAAATTAGAATATGTTCGTTTGGTTGCTTCCGTTAGAATGACAAAC
TCAATCAAGGATCAAATCAATAGCTTCTTAGAAGGTTTCCACGAACTCATTCCAAAATCA
TTGATTGGTATTTTCAATGAAATGGAGTTGGAATTATTGATCAGTGGTCTTCCAGAGATT
GATATCGATGATCTTCGTGCAAACACTGAATATAGTGGTTACTCTTCCGATTCTCAACAA
ATCCTTTGGTTCTGGAATACTGTTTCAAACTTTTCAAATGAAGAAAAAGCTTCACTCTTA
CAATTTGTCACTGGTACAAGTAAAGTACCTTTGGAAGGTTTCAAAGCTTTAGGTGGTATG
GGAGGCCCTCAAAAATTCCAAATTCATAGAATCAGAGGTAATGCTCACAGATTACCAACC
GCTCACACATGTTTCAATCAATTGGATATACCAGAATATGAATNCTCAAGAACAATTGAA
AAAATTATTAAAAATTGCAATTGGTGAAGNCTCAGAAGGTTTGGTTTTGTAAGNATATAT
ATAAAAAAAAAAAAAATAAAANA
Length of 3' end seq. 743
Connected seq. ID CHP159P
Connected seq.
>CHP159P.Seq
CTGTTGGCCTACTGGCACATCCACCAAGNATTTGAGTTTAGATCAAGTATCCCTGATAGT
TTCAATCGTATTCCATCACCACGTAGAATCCTCAAAGAGGTTGCAAAACCAAAGNAAAGT
CAATCAAGCTGGTAGTTTGGTTAAAAAAGAGAATTTATTAGCACTCATTAAAATCCTACA
CTTTGATCAATCCATCAATAGACAACAATTAAATAGTATTCTCGTTCAAATTTGCACATT
TTCTGATAATCGTGAAGAGTTGTTATGTTATATCCTTCAAATTTTAACCGGTTACCAATC
AATTGTTTCTCAACAACCCCAAAGAAAAACCGCTGAATCTGATAAATTCTCACCAATCAC
TGATCCATGTCACCCATTAATGAGATTCCGTATGTTTAGATCATTCGAAGTGACAAATCA
TCCACCATTATTGGTCGTTAAGAGATTATTGGATATTCTTCAAAGTTTAACCACAGGTAA
TAGTTTAACCGTCAATTGGATGTTAACTCCTCAACCAATCGTACCTTCCACTCAATCACA
AAATAGTCATGGAAAAGAGAAAGATGATGGATCTGGTTCAACAAGTCCATCCCTCGAAAA
GGCCTGTCCACTTTGGAAATTATGTGATGCATTGAATGATAAA----------CAATCAA
TGTTAGCGATATGGAGGCAATTGACCCAACTTATCATAAGAATCTTTTATGGATTCTTGA
TAATGATATCACCAATGTCATGGAACTCACATTTAGTACAGAGATCGATATTTTCGATTC
CATGAAAGTTATCGAATTGAAACCAAATGGTGCAAACATTCCTGTCACTGAAGATAATAA
ATTAGAATATGTTCGTTTGGTTGCTTCCGTTAGAATGACAAACTCAATCAAGGATCAAAT
CAATAGCTTCTTAGAAGGTTTCCACGAACTCATTCCAAAATCATTGATTGGTATTTTCAA
TGAAATGGAGTTGGAATTATTGATCAGTGGTCTTCCAGAGATTGATATCGATGATCTTCG
TGCAAACACTGAATATAGTGGTTACTCTTCCGATTCTCAACAAATCCTTTGGTTCTGGAA
TACTGTTTCAAACTTTTCAAATGAAGAAAAAGCTTCACTCTTACAATTTGTCACTGGTAC
AAGTAAAGTACCTTTGGAAGGTTTCAAAGCTTTAGGTGGTATGGGAGGCCCTCAAAAATT
CCAAATTCATAGAATCAGAGGTAATGCTCACAGATTACCAACCGCTCACACATGTTTCAA
TCAATTGGATATACCAGAATATGAATNCTCAAGAACAATTGAAAAAATTATTAAAAATTG
CAATTGGTGAAGNCTCAGAAGGTTTGGTTTTGTAAGNATATATATAAAAAAAAAAAAAAT
AAAANA
Length of connected seq. 1376
Full length Seq ID -
Full length Seq. -
Length of full length seq. -