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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP141
Library CH
(Link to library)
Clone ID CHP141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15679-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHP141 (CHP141Q) /CSM/CH/CHP1-B/CHP141Q.Seq.d/
XXXXXXXXXXCATTAGTAATTACACTGAAAAAGAAACTCATAAAGATATCTCTAAAGATG
TTCAATATTCTTAGATTATTAACCAAAGCAGTTCAATTGTGTAAAGTTAAAAATGAAAAA
GATATAATGAACAAAGTTAAAGGTATTTCAAATTTATCAATTAATGATAATAATAATAGT
TTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTGAAATCATCATCAACTTTCTTCAC
CTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAACAACAACAAACCTCTACCACTT
CAACTCAATCACCATCACCATCATNCTTTCATCAGCATCAACACCACCACCACCATCACA
AATGCTTAAATGAACAACCAAGTAAAACTATNCAATGTAACTATTGNATGTAGTTACTGA
TTNCAAAGTGGTACCGTTTTAACTTNCATTCGAAATTGAATNCTTCAACAANATGAATNC
TGTNTNCTGAATTAAAACGTAAACTTNATNTAATGNAAATTGATNCCTGNAANATGAATG
CTAATGNATTGGNAGTATTNACAAAAGAATNCTGGTNACAGTTTTATT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---LVITLKKKLIKISLKMFNILRLLTKAVQLCKVKNEKDIMNKVKGISNLSINDNNNSF
NQTPIKNQPFFEIIINFLHLHQLSLDHQFNNNNNKPLPLQLNHHHHHXFISINTTTTITN
A*mnnqvklxnvtixcsy*xqsgtvltxirn*xlqqxexcxln*nvnxx*xklxpxx*ml
mxwxyxqknxgxsfi
Translated Amino Acid sequence (All Frames) 
Frame A:
---isnytekethkdiskdvqys*iinqsssiv*s*k*kryneqs*ryfkfin******f
*snsn*kstff*nhhqlsspspaffrspiqqqqqqtsttstqspspsxfhqhqhhhhhhk
clneqpsktxqcnyxm*llixkwyrfnxhsklnxstx*xlxxelkrklxxmxidxxxmna
nxlxvxtkexwxqfy


Frame B:
---LVITLKKKLIKISLKMFNILRLLTKAVQLCKVKNEKDIMNKVKGISNLSINDNNNSF
NQTPIKNQPFFEIIINFLHLHQLSLDHQFNNNNNKPLPLQLNHHHHHXFISINTTTTITN
A*mnnqvklxnvtixcsy*xqsgtvltxirn*xlqqxexcxln*nvnxx*xklxpxx*ml
mxwxyxqknxgxsfi


Frame C:
---**lh*krns*ryl*rcsifldy*pkqfncvklkmkki**tklkvfqiyqlmiiiivl
iklqlkinlflkssstfftftsfl*itnstttttnlyhfnsititixlssastppppsqm
lk*ttk*nyxm*llxvvtdxkvvpf*lxfeiexfnxmnxvx*ikt*txxnxn*xlxxec*
xigsixkrxlvtvl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP141 (CHP141Q) /CSM/CH/CHP1-B/CHP141Q.Seq.d/                        472   e-132
SLG481 (SLG481Q) /CSM/SL/SLG4-D/SLG481Q.Seq.d/                        424   e-118
SHG349 (SHG349Q) /CSM/SH/SHG3-C/SHG349Q.Seq.d/                        424   e-118
CHP838 (CHP838Q) /CSM/CH/CHP8-B/CHP838Q.Seq.d/                        424   e-118
CHO746 (CHO746Q) /CSM/CH/CHO7-B/CHO746Q.Seq.d/                        424   e-118
CHO605 (CHO605Q) /CSM/CH/CHO6-A/CHO605Q.Seq.d/                        424   e-118
CHO140 (CHO140Q) /CSM/CH/CHO1-B/CHO140Q.Seq.d/                        424   e-118
CHN788 (CHN788Q) /CSM/CH/CHN7-D/CHN788Q.Seq.d/                        424   e-118
CHM646 (CHM646Q) /CSM/CH/CHM6-B/CHM646Q.Seq.d/                        424   e-118
CHM287 (CHM287Q) /CSM/CH/CHM2-D/CHM287Q.Seq.d/                        424   e-118
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    80   2e-25  11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    42   2e-08  9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   1e-07  10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   1e-06  11
AC146990|AC146990.2 Lytechinus variegatus clone BLV-104N16, WORKING DRAFT SEQUENCE, 6 ordered pieces.    36   2e-06  7
AC136867|AC136867.2 Rattus norvegicus clone CH230-385B18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38   2e-06  7
BZ115869|BZ115869.1 CH230-255D7.TVB CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-255D7, DNA sequence.    54   3e-06  2
AC119508|AC119508.5 Rattus norvegicus clone CH230-38I4, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    48   3e-06  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40   3e-06  10
AC129344|AC129344.4 Rattus norvegicus clone CH230-114O21, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   6e-06  5
dna update 2005. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_17(AC116305|pid:none) Dictyostelium discoideum chromoso...    41   3e-07
protein update 2009. 1. 3
PSORT 

 psg: 0.79  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHP141 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHP141Z
3' end seq. 
>CHP141Z.Seq
NNNNNNNNNNCATTAGTAATTACACTGAAAAAGAAACTCATAAAGATATCTCTAAAGATG
TTCAATATTCTTAGATTATTAACCAAAGCAGTTCAATTGTGTAAAGTTAAAAATGAAAAA
GATATAATGAACAAAGTTAAAGGTATTTCAAATTTATCAATTAATGATAATAATAATAGT
TTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTGAAATCATCATCAACTTTCTTCAC
CTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAACAACAACAAACCTCTACCACTT
CAACTCAATCACCATCACCATCATNCTTTCATCAGCATCAACACCACCACCACCATCACA
AATGCTTAAATGAACAACCAAGTAAAACTATNCAATGTAACTATTGNATGTAGTTACTGA
TTNCAAAGTGGTACCGTTTTAACTTNCATTCGAAATTGAATNCTTCAACAANATGAATNC
TGTNTNCTGAATTAAAACGTAAACTTNATNTAATGNAAATTGATNCCTGNAANATGAATG
CTAATGNATTGGNAGTATTNACAAAAGAATNCTGGTNACAGTTTTATT
Length of 3' end seq. 588
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -