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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP119
Library CH
(Link to library)
Clone ID CHP119
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID CHP119P
(Link to Original site)
Representative DNA sequence 
>CHP119 (CHP119Q) /CSM/CH/CHP1-A/CHP119Q.Seq.d/
CACTGTTGGCCTACTGGATAATAATAATAATAATACAAATATATATAAATTCAATTTCTT
GTCATAAAAAATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAA
TATAAATAGTAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGG
TAGAGATATTGGTAATAATCAAAGTAGTAGAAATTTAAAACCAAAACCATCACAAAGCAA
TTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAA
GTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGA
TGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGA
TGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACA
GTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAAAG
ATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCA
ACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAGCA
AXXXXXXXXXXCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCC
TGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGA
AGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACA
AACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAAT
CGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAA
GAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAA
TGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTAC
TTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCT
CTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAA
TGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATG
GTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTNCTTCAT
ACCATGCTCACAATATTGTTTTATTNCTTGGTAC
sequence update 2002.10.25
Translated Amino Acid sequence 
tvglldnnnnntniykfnfls*KIMDRNEGGDFPINTPNNINSSGGSYNNSMNNSSNNIG
RDIGNNQSSRNLKPKPSQSNLKWIARDLKKKSVRKDSERKLKSSGVLKKKNTVMDFGEDD
GGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQKKQFPKEMNSPSSEYGTTSGGQR
FDTLVDPDISLAEMEEKMRQHKVYQEQQQQQQQQQQQQKQ---

---IVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEATDLWRAEQT
FFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVNE
NDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVLRFNCFQND
MWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYAXFIPCSQYCFIXWY
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptg*****ykyi*iqflviknng*k*rg*fpnkhp**yk**wg*l***ye*****yw
*ryw**sk**kfktktitkqfemdskrfkkeic*krfrekvke*wcfkekeycdglw*r*
ww*w*rw*ynrrftn**ryg*ftiifklswrqr***tketvpkgnefsiigiwhnkwrsk
i*yig*s*y*fsrdgrenastqgiprattattttatttka---

---qsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*kllifgelnk
lslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fvkfsvklnwsm
kmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**vlyldlivskm
icgfwls*lvslslpygiyglsfqwlfvkvknnghmlxsyhahnivlxlg

Frame B:
tvglldnnnnntniykfnfls*KIMDRNEGGDFPINTPNNINSSGGSYNNSMNNSSNNIG
RDIGNNQSSRNLKPKPSQSNLKWIARDLKKKSVRKDSERKLKSSGVLKKKNTVMDFGEDD
GGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQKKQFPKEMNSPSSEYGTTSGGQR
FDTLVDPDISLAEMEEKMRQHKVYQEQQQQQQQQQQQQKQ---

---nrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlgrsy*sles*tn
flwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*sfpsn*igq*
k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydecct*i*lfpk*
yvafgcrswflflylmafmvfhsngsssk*ktmaicxlhtmltilfyxlv

Frame C:
llaywiiiiiiqiyinsischkk*wiemkgvisq*tplii*ivvgvviiiv*iivviilv
eilviikvvei*nqnhhkai*ng*qei*krnllekiqres*rvvvf*rkril*wtlvkmm
vvvvtmvi*pkvyqlvkvwmiyhhlqtlvaaavmmnkrnssqrk*ilhhrnmaqqvavkd
lihwlililv*qrwkrkcvntrytksnnsnnnnsnnnks---

---IVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEATDLWRAEQT
FFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVNE
NDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVLRFNCFQND
MWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYAXFIPCSQYCFIXWY
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP495 (CHP495Q) /CSM/CH/CHP4-D/CHP495Q.Seq.d/                       1342   0.0
CHP123 (CHP123Q) /CSM/CH/CHP1-A/CHP123Q.Seq.d/                       1342   0.0
CHP119 (CHP119Q) /CSM/CH/CHP1-A/CHP119Q.Seq.d/                       1342   0.0
SFI842 (SFI842Q) /CSM/SF/SFI8-B/SFI842Q.Seq.d/                       1332   0.0
CHP570 (CHP570Q) /CSM/CH/CHP5-C/CHP570Q.Seq.d/                       1332   0.0
CHL209 (CHL209Q) /CSM/CH/CHL2-A/CHL209Q.Seq.d/                       1332   0.0
AHO829 (AHO829Q) /CSM/AH/AHO8-B/AHO829Q.Seq.d/                       1332   0.0
AHC793 (AHC793Q) /CSM/AH/AHC7-D/AHC793Q.Seq.d/                       1332   0.0
SHL139 (SHL139Q) /CSM/SH/SHL1-B/SHL139Q.Seq.d/                       1330   0.0
CHP367 (CHP367Q) /CSM/CH/CHP3-C/CHP367Q.Seq.d/                       1330   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1273   0.0    2
CR376767|CR376767.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    54   4e-09  6
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence.    38   4e-07  9
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    36   7e-07  17
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    42   7e-06  13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   1e-05  19
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    36   1e-04  19
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    46   2e-04  5
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    44   3e-04  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   3e-04  18
dna update 2005. 9.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   433   e-120
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.18
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/...    35   4.5
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   4.5
protein update 2009. 4.10
PSORT 

 psg: 0.75  gvh: 0.19  alm: 0.23  top: 0.67  tms: 0.20  mit: 0.27  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHP119 is pla
5' end seq. ID CHP119F
5' end seq. 
>CHP119F.Seq
CACTGTTGGCCTACTGGATAATAATAATAATAATACAAATATATATAAATTCAATTTCTT
GTCATAAAAAATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAA
TATAAATAGTAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGG
TAGAGATATTGGTAATAATCAAAGTAGTAGAAATTTAAAACCAAAACCATCACAAAGCAA
TTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAA
GTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGA
TGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGA
TGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACA
GTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAAAG
ATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCA
ACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAGCA
ANNNNNNNNNN
Length of 5' end seq. 671
3' end seq. ID CHP119Z
3' end seq. 
>CHP119Z.Seq
NNNNNNNNNNCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCT
GTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAA
GCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAA
ACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATC
GTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAG
AGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAAT
GAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACT
TCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTC
TTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAAT
GATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGG
TCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTNCTTCATA
CCATGCTCACAATATTGTTTTATTNCTTGGTAC
Length of 3' end seq. 693
Connected seq. ID CHP119P
Connected seq. 
>CHP119P.Seq
CACTGTTGGCCTACTGGATAATAATAATAATAATACAAATATATATAAATTCAATTTCTT
GTCATAAAAAATAATGGATAGAAATGAAGGGGGTGATTTCCCAATAAACACCCCTAATAA
TATAAATAGTAGTGGGGGTAGTTATAATAATAGTATGAATAATAGTAGTAATAATATTGG
TAGAGATATTGGTAATAATCAAAGTAGTAGAAATTTAAAACCAAAACCATCACAAAGCAA
TTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAAAAGATTCAGAGAGAAA
GTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGGACTTTGGTGAAGATGA
TGGTGGTAGTGGTGACGATGGTAATATAACCGAAGGTTTACCAATTAGTGAAGGTATGGA
TGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATGATGAACAAAAGAAACA
GTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAACAAGTGGCGGTCAAAG
ATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGGAAGAGAAAATGCGTCA
ACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGCAACAACAACAAAAGCA
A----------CAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCC
TGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGA
AGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACA
AACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAAT
CGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAA
GAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAA
TGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTAC
TTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCT
CTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAA
TGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATG
GTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTNCTTCAT
ACCATGCTCACAATATTGTTTTATTNCTTGGTAC
Length of connected seq. 1344
Full length Seq ID -
Full length Seq. -
Length of full length seq. -