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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP106
Library CH
(Link to library)
Clone ID CHP106
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID CHP106P
(Link to Original site)
Representative DNA sequence 
>CHP106 (CHP106Q) /CSM/CH/CHP1-A/CHP106Q.Seq.d/
ACTGTTGGCCTACTGGNATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCC
TATTCGGCTAATAATGGTCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCA
TCTAAATTGGTTGGAGAGCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCA
CAACAAATTTGGAAGATAGAAGAGGCATTAGATGAAACATTAAATGAAGTATGGGATATA
AATATAGATCCAGTTTCAATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTG
GTTAAAACTGATCATAAAATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAAT
CAAACTAGAATTTTAAAAGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTT
GGAGAGATTACAGGTGAATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTA
CCATTTATGATTGATTTATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATT
ATTAGTCAATTTGCATCGATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAG
XXXXXXXXXXTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTA
TATTAGATTGGTCAGATCCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTAC
CAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTG
AAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTAT
CAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATA
TCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACA
TCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTG
AAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTAT
TAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTG
AAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAA
ATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllx**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYA
QQIWKIEEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICN
QTRILKETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNI
ISQFASIYQSQKNIHTQFFK---

---LDHFRLLITHIGNAMGYIRLVRSRWFTLL**cyqirtrlekdskiprfnlkrcplt*
nnss*yqfgfnhs*sfk*firgy*il*dvgkrfryrvskyr*stfkeflyhrtclglklh
rsydq**r*tl*eiksnrc*sfiih**wlcnwfglylkiirsk*rfrfsslvrsysiem*
n*skenvg*skckryqrgsksfsn*kdskfptri*
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllx**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYA
QQIWKIEEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICN
QTRILKETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNI
ISQFASIYQSQKNIHTQFFK---

---LDHFRLLITHIGNAMGYIRLVRSRWFTLL**cyqirtrlekdskiprfnlkrcplt*
nnss*yqfgfnhs*sfk*firgy*il*dvgkrfryrvskyr*stfkeflyhrtclglklh
rsydq**r*tl*eiksnrc*sfiih**wlcnwfglylkiirsk*rfrfsslvrsysiem*
n*skenvg*skckryqrgsksfsn*kdskfptri*

Frame B:
llaywxnkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimh
nkfgr*krh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfvi
klef*kkqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leil
lvnlhrsinhkriyihnsl---

---*iildf*slilvmlwvildwsdpgglhycsnaikfvpdlkkipkfqdltskdalspe
tiqastnldsiihnlsnnlsegteyfkmlvnvfatefrnianqhlknfyiivpalasnyi
dhminskdklfkkskaigaeallftddgfaiglayilklldqnkdfdslhwfdriqlkce
tdqkrmlaeanakgikedqnhlaikkiqnfqqeye

Frame C:
cwptgiikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lct
tnledrrgir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*s
n*nfkrnsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy
*sicidlsitkeytytil*---

---rsf*tfnhsyw*cygly*igqipvvytivvmlsnsyqt*krfqnski*pqkmpshlk
qfklvpiwiqsfiifqiiyqrvlntlrcw*tfslqsfeislini*risissylpwpqits
ii*sivkinslrnqkqsvlklyyslmmalqlvwlis*ny*ikikisilfigsivfn*nvk
likrecwlkqmqkvskrikii*qlkrfkisnknmn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP106 (CHP106Q) /CSM/CH/CHP1-A/CHP106Q.Seq.d/                       2409   0.0
VHK538 (VHK538Q) /CSM/VH/VHK5-B/VHK538Q.Seq.d/                       1249   0.0
VHC161 (VHC161Q) /CSM/VH/VHC1-C/VHC161Q.Seq.d/                       1249   0.0
VHB619 (VHB619Q) /CSM/VH/VHB6-A/VHB619Q.Seq.d/                       1249   0.0
VHB189 (VHB189Q) /CSM/VH/VHB1-D/VHB189Q.Seq.d/                       1249   0.0
SHL542 (SHL542Q) /CSM/SH/SHL5-B/SHL542Q.Seq.d/                       1249   0.0
SHJ537 (SHJ537Q) /CSM/SH/SHJ5-B/SHJ537Q.Seq.d/                       1249   0.0
SHD893 (SHD893Q) /CSM/SH/SHD8-D/SHD893Q.Seq.d/                       1249   0.0
SHD671 (SHD671Q) /CSM/SH/SHD6-C/SHD671Q.Seq.d/                       1249   0.0
SHD651 (SHD651Q) /CSM/SH/SHD6-C/SHD651Q.Seq.d/                       1249   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP008934|AP008934.1 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome.    32   3e-06  36
AE017243|AE017243.1 Mycoplasma hyopneumoniae J, complete genome.    34   8e-06  25
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        34   2e-05  27
AR584244|AR584244.1 Sequence 1 from patent US 6797466.             36   2e-05  31
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             36   2e-05  31
BX571857|BX571857.1 Staphylococcus aureus strain MSSA476, complete genome.    34   4e-05  36
BA000033|BA000033.2 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2.    34   5e-05  35
CR925678|CR925678.1 Ehrlichia ruminantium str. Welgevonden, complete genome.    40   5e-05  30
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    30   5e-05  21
AE017244|AE017244.1 Mycoplasma hyopneumoniae 7448, complete genome.    34   6e-05  26
dna update 2005. 9.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               380   e-112
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   185   3e-50
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   185   3e-50
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   185   3e-50
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      182   1e-49
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   182   1e-49
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...   182   1e-49
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN...   182   1e-49
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   153   1e-35
CR858798_1(CR858798|pid:none) Pongo abelii mRNA; cDNA DKFZp468B1...   153   1e-35
protein update 2009. 4.10
PSORT 

 psg: 0.79  gvh: 0.25  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHP106 is nuc
5' end seq. ID CHP106F
5' end seq. 
>CHP106F.Seq
ACTGTTGGCCTACTGGNATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCC
TATTCGGCTAATAATGGTCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCA
TCTAAATTGGTTGGAGAGCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCA
CAACAAATTTGGAAGATAGAAGAGGCATTAGATGAAACATTAAATGAAGTATGGGATATA
AATATAGATCCAGTTTCAATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTG
GTTAAAACTGATCATAAAATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAAT
CAAACTAGAATTTTAAAAGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTT
GGAGAGATTACAGGTGAATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTA
CCATTTATGATTGATTTATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATT
ATTAGTCAATTTGCATCGATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAG
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID CHP106Z
3' end seq. 
>CHP106Z.Seq
NNNNNNNNNNTTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTA
TATTAGATTGGTCAGATCCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTAC
CAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTG
AAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTAT
CAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATA
TCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACA
TCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTG
AAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTAT
TAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTG
AAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAA
ATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAAT
Length of 3' end seq. 648
Connected seq. ID CHP106P
Connected seq. 
>CHP106P.Seq
ACTGTTGGCCTACTGGNATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCC
TATTCGGCTAATAATGGTCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCA
TCTAAATTGGTTGGAGAGCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCA
CAACAAATTTGGAAGATAGAAGAGGCATTAGATGAAACATTAAATGAAGTATGGGATATA
AATATAGATCCAGTTTCAATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTG
GTTAAAACTGATCATAAAATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAAT
CAAACTAGAATTTTAAAAGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTT
GGAGAGATTACAGGTGAATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTA
CCATTTATGATTGATTTATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATT
ATTAGTCAATTTGCATCGATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAG
----------TTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTA
TATTAGATTGGTCAGATCCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTAC
CAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTG
AAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTAT
CAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATA
TCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACA
TCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTG
AAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTAT
TAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTG
AAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAA
ATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATATGAAT
Length of connected seq. 1238
Full length Seq ID -
Full length Seq. -
Length of full length seq. -