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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO881
Library CH
(Link to library)
Clone ID CHO881
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16366-1|Contig-U16429-1
Original site URL
Representative seq. ID CHO881P
(Link to Original site)
Representative DNA sequence 
>CHO881 (CHO881Q) /CSM/CH/CHO8-D/CHO881Q.Seq.d/
ATATAAATTACCTTATTACTTAAAGTATGACNACAAATAATCCATTTGATAAAGTAAAGG
ATGTATTAAAATCACAAGATCAAACTTATAATTTTTATAATCTTTCAAAACTTCAAGACC
CAAGAATTGAAAAATTACCATACTCCATTAGAATTCTTTTGGAATCAGCAGTTCGNAATT
GTGATAACTTTGAAGTACACGAAAANGATGTTGAXXXXXXXXXXTCTTGGTGATAGTATT
ACCACTGATCATATTTCACCAGCCGGTAACATCAATAGAAAATCATCAGCCGCTCGTTAT
TTAGAGTCCAAAGGTGTAAAACCAGAAGATTTTAACACCTATGGATCTCGTAGAGGTAAT
GATGAAATTATGGTTAGAGGTACCTTTGCCAATACTCGTATTGTTAATAAATTGGCTCCA
GCCGTTGGTCCACAAACAACCTATGTACCAACTGGTGAGTTAATGTTTATTTCAGATGCT
GCAGAAAAATATCAATCAGAAGGTCATCAACTCATTGTTTTGGCTGGTAGTGATTATGGC
TCTGGTAGTTCTAGAGATTGGGCTGCCAAAGGTCCATACCTTCAAGGAATTAAGTGTGTC
ATTGCCATCTCATTTGAACGTATTCATAGATCCAATCTCGTTGGTATGGGTATTATCCCA
TTGCAATTCCAACCAGGTCAAAATGCCTCTACTTTGGGTCTCACTGGTAAAGAACAATTC
AATATCGAGTTACCAACNTGATAAATCCCTCATTAAAACNGGTCAAACCGTAAAGGTTAC
CACTAATTGTGGTAAATCTTTTGAAACTATCCTTCGTTTCGATACTCCAATCGAAGTTGA
ATATTGGGCAAATAANGGTATCTTATCTTATGTTTTAAGAAAACTTTACATNATTTCTTT
TTTAANAAAAAAAAAAAAAANAA
sequence update 2002.10.25
Translated Amino Acid sequence 
inylit*SMTTNNPFDKVKDVLKSQDQTYNFYNLSKLQDPRIEKLPYSIRILLESAVRNC
DNFEVHEXDV---

---LGDSITTDHISPAGNINRKSSAARYLESKGVKPEDFNTYGSRRGNDEIMVRGTFANT
RIVNKLAPAVGPQTTYVPTGELMFISDAAEKYQSEGHQLIVLAGSDYGSGSSRDWAAKGP
YLQGIKCVIAISFERIHRSNLVGMGIIPLQFQPGQNASTLGLTGKEQFNIELPT**iph*
nxsnrkgyh*lw*if*nypsfrysnrs*ilgk*xylilcfkktlhxfffxkkkkx
Translated Amino Acid sequence (All Frames) 
Frame A:
i*itlllkv*xqiihlik*rmy*nhkikliifiifqnfktqelknyhtpleffwnqqfxi
vitlkytkxml---

---sw**yyh*syftsr*hq*kiisrslfrvqrcktrrf*hlwis*r***nyg*rylcqy
syc**igssrwstnnlctnw*vnvyfrccrkisirrssthcfgw**lwlw*f*rlgcqrs
ipsrn*vchchli*tys*iqsrwygyypiaiptrskclyfgshw*rtiqyrvtnxinpsl
kxvkp*rlplivvnllklsfvsilqsklnigqixvsylmf*enftxflf*xkkkkx

Frame B:
yklpyylkydxk*si**skgcikitrsnl*fl*sfktsrpkn*kitilh*nsfgisssxl
**l*strkxc*---

---LGDSITTDHISPAGNINRKSSAARYLESKGVKPEDFNTYGSRRGNDEIMVRGTFANT
RIVNKLAPAVGPQTTYVPTGELMFISDAAEKYQSEGHQLIVLAGSDYGSGSSRDWAAKGP
YLQGIKCVIAISFERIHRSNLVGMGIIPLQFQPGQNASTLGLTGKEQFNIELPT**iph*
nxsnrkgyh*lw*if*nypsfrysnrs*ilgk*xylilcfkktlhxfffxkkkkx

Frame C:
inylit*SMTTNNPFDKVKDVLKSQDQTYNFYNLSKLQDPRIEKLPYSIRILLESAVRNC
DNFEVHEXDV---

---lvivlpliifhqpvtsienhqplvi*spkv*nqkiltpmdlvevmmklwlevplpil
vllinwlqplvhkqpmyqlvs*clfqmlqkninqkvinslfwlvvimalvvleiglpkvh
tfkelsvslpshlnvfidpislvwvlshcnsnqvkmpllwvslvknnsissyqxdkslik
tgqtvkvttncgksfetilrfdtpieveywanxgilsyvlrklyxisflxkkkkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO881 (CHO881Q) /CSM/CH/CHO8-D/CHO881Q.Seq.d/                       1693   0.0
VHJ812 (VHJ812Q) /CSM/VH/VHJ8-A/VHJ812Q.Seq.d/                       1312   0.0
CHN830 (CHN830Q) /CSM/CH/CHN8-B/CHN830Q.Seq.d/                       1310   0.0
SHE776 (SHE776Q) /CSM/SH/SHE7-D/SHE776Q.Seq.d/                       1306   0.0
VHB318 (VHB318Q) /CSM/VH/VHB3-A/VHB318Q.Seq.d/                       1302   0.0
SHG840 (SHG840Q) /CSM/SH/SHG8-B/SHG840Q.Seq.d/                       1302   0.0
SHG304 (SHG304Q) /CSM/SH/SHG3-A/SHG304Q.Seq.d/                       1302   0.0
CHO375 (CHO375Q) /CSM/CH/CHO3-D/CHO375Q.Seq.d/                       1302   0.0
CHN876 (CHN876Q) /CSM/CH/CHN8-D/CHN876Q.Seq.d/                       1302   0.0
CHF743 (CHF743Q) /CSM/CH/CHF7-B/CHF743Q.Seq.d/                       1302   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ511380|BQ511380.2 EST618795 Generation of a set of potato cDNA clones for microarray5' end, mRNA sequence.    58   2e-16  3
BI927352|BI927352.1 EST547241 tomato flower, 3 - 8 mm buds Lycopersicon esculentum cDNA clone cTOB22E7 5' end, mRNA sequence.    58   6e-15  3
AW622039|AW622039.1 EST312837 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14G21 5', mRNA sequence.    58   7e-15  3
CK719688|CK719688.1 19969 Swollen Stolon Solanum tuberosum cDNA, mRNA sequence.    58   7e-15  3
BG889764|BG889764.1 EST515615 cSTD Solanum tuberosum cDNA clone cSTD15K20 5' sequence, mRNA sequence.    58   8e-15  3
AF194945|AF194945.1 Nicotiana tabacum cytosolic aconitase (ACO) mRNA, complete cds.    66   9e-15  3
AI775579|AI775579.1 EST256679 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER15P4, mRNA sequence.    58   1e-13  2
AW455290|AW455290.1 EST311828 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX10C9 5', mRNA sequence.    58   2e-12  2
BM062502|BM062502.1 KS01043F01 KS01 Capsicum annuum cDNA, mRNA sequence.    58   2e-12  2
CK270637|CK270637.1 EST716715 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POACU43 5' end, mRNA sequence.    58   3e-12  2
dna update 2005. 9.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X73) RecName: Full=Probable cytoplasmic aconitate hydratase;...   344   e-116
AB236788_1(AB236788|pid:none) Trifolium pratense RNA for putativ...   245   6e-73
(Q23500) RecName: Full=Probable cytoplasmic aconitate hydratase;...   249   8e-73
AP008209_256(AP008209|pid:none) Oryza sativa (japonica cultivar-...   240   2e-72
DQ294230_1(DQ294230|pid:none) Glossina morsitans morsitans TC165...   246   4e-72
BT060820_1(BT060820|pid:none) Zea mays full-length cDNA clone ZM...   240   7e-72
BT060665_1(BT060665|pid:none) Zea mays full-length cDNA clone ZM...   241   1e-71
(P49608) RecName: Full=Aconitate hydratase, cytoplasmic;        ...   235   2e-70
BC168529_1(BC168529|pid:none) Xenopus tropicalis cDNA clone MGC:...   237   2e-70
(Q9SIB9) RecName: Full=Aconitate hydratase 2, mitochondrial;    ...   238   3e-70
protein update 2009. 4.10
PSORT 

 psg: 0.52  gvh: 0.34  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHO881 is nuc
5' end seq. ID CHO881F
5' end seq. 
>CHO881F.Seq
ATATAAATTACCTTATTACTTAAAGTATGACNACAAATAATCCATTTGATAAAGTAAAGG
ATGTATTAAAATCACAAGATCAAACTTATAATTTTTATAATCTTTCAAAACTTCAAGACC
CAAGAATTGAAAAATTACCATACTCCATTAGAATTCTTTTGGAATCAGCAGTTCGNAATT
GTGATAACTTTGAAGTACACGAAAANGATGTTGANNNNNNNNNN
Length of 5' end seq. 224
3' end seq. ID CHO881Z
3' end seq. 
>CHO881Z.Seq
NNNNNNNNNNTCTTGGTGATAGTATTACCACTGATCATATTTCACCAGCCGGTAACATCA
ATAGAAAATCATCAGCCGCTCGTTATTTAGAGTCCAAAGGTGTAAAACCAGAAGATTTTA
ACACCTATGGATCTCGTAGAGGTAATGATGAAATTATGGTTAGAGGTACCTTTGCCAATA
CTCGTATTGTTAATAAATTGGCTCCAGCCGTTGGTCCACAAACAACCTATGTACCAACTG
GTGAGTTAATGTTTATTTCAGATGCTGCAGAAAAATATCAATCAGAAGGTCATCAACTCA
TTGTTTTGGCTGGTAGTGATTATGGCTCTGGTAGTTCTAGAGATTGGGCTGCCAAAGGTC
CATACCTTCAAGGAATTAAGTGTGTCATTGCCATCTCATTTGAACGTATTCATAGATCCA
ATCTCGTTGGTATGGGTATTATCCCATTGCAATTCCAACCAGGTCAAAATGCCTCTACTT
TGGGTCTCACTGGTAAAGAACAATTCAATATCGAGTTACCAACNTGATAAATCCCTCATT
AAAACNGGTCAAACCGTAAAGGTTACCACTAATTGTGGTAAATCTTTTGAAACTATCCTT
CGTTTCGATACTCCAATCGAAGTTGAATATTGGGCAAATAANGGTATCTTATCTTATGTT
TTAAGAAAACTTTACATNATTTCTTTTTTAANAAAAAAAAAAAAAANAA
Length of 3' end seq. 709
Connected seq. ID CHO881P
Connected seq. 
>CHO881P.Seq
ATATAAATTACCTTATTACTTAAAGTATGACNACAAATAATCCATTTGATAAAGTAAAGG
ATGTATTAAAATCACAAGATCAAACTTATAATTTTTATAATCTTTCAAAACTTCAAGACC
CAAGAATTGAAAAATTACCATACTCCATTAGAATTCTTTTGGAATCAGCAGTTCGNAATT
GTGATAACTTTGAAGTACACGAAAANGATGTTGA----------TCTTGGTGATAGTATT
ACCACTGATCATATTTCACCAGCCGGTAACATCAATAGAAAATCATCAGCCGCTCGTTAT
TTAGAGTCCAAAGGTGTAAAACCAGAAGATTTTAACACCTATGGATCTCGTAGAGGTAAT
GATGAAATTATGGTTAGAGGTACCTTTGCCAATACTCGTATTGTTAATAAATTGGCTCCA
GCCGTTGGTCCACAAACAACCTATGTACCAACTGGTGAGTTAATGTTTATTTCAGATGCT
GCAGAAAAATATCAATCAGAAGGTCATCAACTCATTGTTTTGGCTGGTAGTGATTATGGC
TCTGGTAGTTCTAGAGATTGGGCTGCCAAAGGTCCATACCTTCAAGGAATTAAGTGTGTC
ATTGCCATCTCATTTGAACGTATTCATAGATCCAATCTCGTTGGTATGGGTATTATCCCA
TTGCAATTCCAACCAGGTCAAAATGCCTCTACTTTGGGTCTCACTGGTAAAGAACAATTC
AATATCGAGTTACCAACNTGATAAATCCCTCATTAAAACNGGTCAAACCGTAAAGGTTAC
CACTAATTGTGGTAAATCTTTTGAAACTATCCTTCGTTTCGATACTCCAATCGAAGTTGA
ATATTGGGCAAATAANGGTATCTTATCTTATGTTTTAAGAAAACTTTACATNATTTCTTT
TTTAANAAAAAAAAAAAAAANAA
Length of connected seq. 913
Full length Seq ID -
Full length Seq. -
Length of full length seq. -