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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHO866
Library CH
(Link to library)
Clone ID CHO866
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14442-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHO866 (CHO866Q) /CSM/CH/CHO8-C/CHO866Q.Seq.d/
AATTTCCTAAATACATAGTTTTTAAAACAAACATTTAATATCACTTTTTTTCTTATAACT
TTTATTTTTATTTTTATTTTTATTTTTTTTTTTTAAATTATTACTCTATAATATATACAA
TATAAAAGGGTTCATGTNTCAAGCTTTAAAAACGACCACCCACTCGACAAAAGAANANAA
GTAGCTGAACGTNTTAAATCAAAGTATNTTGATANAATTCCAGTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
is*ihsf*nkhlislffl*LLFLFLFLFFFFKLLLYNIYNIKGFMXQALKTTTHSTKEXK
*lnvlnqsxlixfq---
Translated Amino Acid sequence (All Frames) 
Frame A:
nflnt*flkqtfnitfflitfififififff*iitl*yiqykrvhvssfkndhpldkrxx
vaerxkskyxdxip---


Frame B:
is*ihsf*nkhlislffl*LLFLFLFLFFFFKLLLYNIYNIKGFMXQALKTTTHSTKEXK
*lnvlnqsxlixfq---


Frame C:
fpkyivfktni*yhffsynfyfyfyfyffflnyysiiyti*kgscxkl*krpptrqkxxs
s*tx*ikvx*xns---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO866 (CHO866Q) /CSM/CH/CHO8-C/CHO866Q.Seq.d/                        222   2e-57
SSC775 (SSC775Q) /CSM/SS/SSC7-D/SSC775Q.Seq.d/                        145   3e-34
SLB339 (SLB339Q) /CSM/SL/SLB3-B/SLB339Q.Seq.d/                        125   3e-28
VSH508 (VSH508Q) /CSM/VS/VSH5-A/VSH508Q.Seq.d/                        107   7e-23
VSJ491 (VSJ491Q) /CSM/VS/VSJ4-D/VSJ491Q.Seq.d/                         98   7e-20
SSD117 (SSD117Q) /CSM/SS/SSD1-A/SSD117Q.Seq.d/                         36   0.22
SSL860 (SSL860Q) /CSM/SS/SSL8-C/SSL860Q.Seq.d/                         34   0.87
SSC125 (SSC125Q) /CSM/SS/SSC1-B/SSC125Q.Seq.d/                         34   0.87
VSJ312 (VSJ312Q) /CSM/VS/VSJ3-A/VSJ312Q.Seq.d/                         32   3.4
VSF354 (VSF354Q) /CSM/VS/VSF3-C/VSF354Q.Seq.d/                         32   3.4
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY191015|AY191015.1 Dictyostelium discoideum autophagy protein 8 (apg8) gene, complete cds.    80   2e-25  2
CS083879|CS083879.1 Sequence 62 from Patent WO2005040377.          36   0.012  2
AG093264|AG093264.1 Pan troglodytes DNA, clone: PTB-093K20.R.      36   0.013  2
CX718148|CX718148.1 1334692 NCCCWA 07RT Oncorhynchus mykiss cDNA 3', mRNA sequence.    50   0.018  1
CS083958|CS083958.1 Sequence 141 from Patent WO2005040377.         36   0.023  2
BX465843|BX465843.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48   0.072  1
CR384103|CR384103.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48   0.072  1
CR224953|CR224953.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN106i08.    36   0.13   2
CR072681|CR072681.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN107i08.    36   0.15   2
CW424478|CW424478.1 fsbb001f134n10k0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f134n10, genomic survey sequence.    46   0.29   1
dna update 2005. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86CR8) RecName: Full=Autophagy-related protein 8; AltName: Ful...    56   3e-07
(Q8H715) RecName: Full=Autophagy-related protein 8; AltName: Ful...    40   0.024
(Q9SL04) RecName: Full=Autophagy-related protein 8d; AltName: Fu...    40   0.024
(Q5KN30) RecName: Full=Autophagy-related protein 8; AltName: Ful...    40   0.031
(Q5B2U9) RecName: Full=Autophagy-related protein 8; AltName: Ful...    39   0.069
(Q8J282) RecName: Full=Autophagy-related protein 8; AltName: Ful...    38   0.090
(A6RPU4) RecName: Full=Autophagy-related protein 8; AltName: Ful...    38   0.090
(A7KAL9) RecName: Full=Autophagy-related protein 8; AltName: Ful...    38   0.090
(A1CQS1) RecName: Full=Autophagy-related protein 8; AltName: Ful...    38   0.090
EU477413_1(EU477413|pid:none) Moniliophthora perniciosa autophag...    38   0.090
protein update 2009. 4.10
PSORT 

 psg: 1.04  gvh: 0.57  alm: 0.19  top: 0.60  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.24  leu: 0.24  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHO866 is cyt
5' end seq. ID CHO866F
5' end seq. 
>CHO866F.Seq
AATTTCCTAAATACATAGTTTTTAAAACAAACATTTAATATCACTTTTTTTCTTATAACT
TTTATTTTTATTTTTATTTTTATTTTTTTTTTTTAAATTATTACTCTATAATATATACAA
TATAAAAGGGTTCATGTNTCAAGCTTTAAAAACGACCACCCACTCGACAAAAGAANANAA
GTAGCTGAACGTNTTAAATCAAAGTATNTTGATANAATTCCAGTNNNNNNNNNN
Length of 5' end seq. 234
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -