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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO833
Library CH
(Link to library)
Clone ID CHO833
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11893-1
Original site URL
Representative seq. ID CHO833P
(Link to Original site)
Representative DNA sequence 
>CHO833 (CHO833Q) /CSM/CH/CHO8-B/CHO833Q.Seq.d/
AAAAACAAATTTAATTAAACTCAATTTTTAAAAAAGATGCCACCAAAGAAAAGACAATTA
TCACAAAGTGATGAAGATGTAAAAACCACTACAACCACTACTACTTCAACATCAACAAAA
CCACTCACTGAAATTTTCGATGGAATTGTATTTTGTTTTTCAGGTACATTTTCAGTAACA
CAAACTGAATTAACAAAAAAAGTTGAAGGTTGTGGCGCATCAACCTCAAAAACATGCACT
GCTAAAGTTACACATTTAGTATCAACTGTAGATGATTTTAAAAAGAATGGTACAGCAGTT
TCAAAAGCTCTCAAATCTGGTATTCCAATTGTAACCGAAGGTTTCATTACTAAATCAATT
GAAGCATCAAAGAAATTGGAAGAAAAAGGTTATTCACTTTCATCTTCAAACGATGACGAA
GAGGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGTTGCCAAA
CCAACTAGAAGATCATCAAAGAAAGCACCAGCTAAATCTGAAGAAAAAGGAGAAGATAAA
AATAAACTTACAACTCGTCCAACTAAAAAAACTAAAACCAATACAAGTGAAGCTGAAACC
AAAACAGCTGCATCAGATCTTGATGATAGCAGTAGTGAATCTGAAXXXXXXXXXXGGTGG
AAANAAACCAACCATTGTAAACATTTTCAAGATTGATNGTGATGGTGAAGCAGATNGTTA
TAAAACTAAAAAACATNTTGGTAATANAAAACTNTTANGGCATGGTTNTCGTTTAACAAA
TTATGCTTCCATCATTTCACAAGGTTTAANAATTGCTCCNCCTGAAGCTCCAGTTTNTGG
TTATANATTTGGAAAAGGTGTTTATTTTGCTGATTGTATGTCNCTTTNTGCAAANTATTG
TANAACAGTTGGATNTAATGATTTTTGTATGTTANTAGGTGATGNTGCATTGGGTAAAAC
TGCANATTTGGNTANANATACTTATATGGAGAAACCNCAACCAAATTTTCATTCAACTTG
GGCTTTAGGTACTGTTGAACCAGATCCAAAAGTATTTTTCCAANATANTGAAGGTTGTAT
CACTCCANACGGCCAAATGATTCCATNTCAACATAAAGGTGTTTNTTGTTATGAACANCA
ATANGTCGTTTATGATGTTGCTCAAGTTCNTTTGAAANATCTTTTGCNATTAANAAATTA
ATAAACTATATTTAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
knkfn*TQFLKKMPPKKRQLSQSDEDVKTTTTTTTSTSTKPLTEIFDGIVFCFSGTFSVT
QTELTKKVEGCGASTSKTCTAKVTHLVSTVDDFKKNGTAVSKALKSGIPIVTEGFITKSI
EASKKLEEKGYSLSSSNDDEEEEEEEEEEEEEEEEEEVAKPTRRSSKKAPAKSEEKGEDK
NKLTTRPTKKTKTNTSEAETKTAASDLDDSSSESE---

---GGXKPTIVNIFKIDXDGEADXYKTKKHXGNXKLLXHGXRLTNYASIISQGLXIAPPE
APVXGYXFGKGVYFADCMSLXAXYCXTVGXNDFCMLXGDXALGKTAXLXXXTYMEKPQPN
FHSTWALGTVEPDPKVFFQXXEGCITPXGQMIPXQHKGVXCYEXQXVVYDVAQVXLKXLL
XLXN**tifn
Translated Amino Acid sequence (All Frames) 
Frame A:
knkfn*TQFLKKMPPKKRQLSQSDEDVKTTTTTTTSTSTKPLTEIFDGIVFCFSGTFSVT
QTELTKKVEGCGASTSKTCTAKVTHLVSTVDDFKKNGTAVSKALKSGIPIVTEGFITKSI
EASKKLEEKGYSLSSSNDDEEEEEEEEEEEEEEEEEEVAKPTRRSSKKAPAKSEEKGEDK
NKLTTRPTKKTKTNTSEAETKTAASDLDDSSSESE---

---GGXKPTIVNIFKIDXDGEADXYKTKKHXGNXKLLXHGXRLTNYASIISQGLXIAPPE
APVXGYXFGKGVYFADCMSLXAXYCXTVGXNDFCMLXGDXALGKTAXLXXXTYMEKPQPN
FHSTWALGTVEPDPKVFFQXXEGCITPXGQMIPXQHKGVXCYEXQXVVYDVAQVXLKXLL
XLXN**tifn

Frame B:
ktnliklnf*krchqrkdnyhkvmkm*kplqplllqhqqnhslkfsmelyfvfqvhfq*h
kln*qkklkvvahqpqkhallklhi*yql*milkrmvqqfqklsnlvfql*pkvsllnql
khqrnwkkkvihfhlqtmtkrkkkkrkkkrkrkkkkklpnqledhqrkhqlnlkkkekik
inlqlvqlkklkpiqvklkpkqlhqilmiavvnl---

---vexnqpl*tfsrlxvmvkqxviklknxlvixnxxgmvxv*qimlpsfhkv*xllxlk
lqfxvixlekvfillivcxfxqxivxqldxmifvcx*vmxhwvklxiwxxiliwrnxnqi
fiqlgl*vllnqiqkyfsxixkvvslxtak*fhxnikvfxvmnxnxsfmmllkfx*xifc
x*xinklyl

Frame C:
kqi*lnsifkkdatkektiitk**rcknhynhyyfninktth*nfrwncilffryifsnt
n*inkks*rlwrinlknmhc*sytfsincr*f*kewyssfkssqiwysncnrrfhy*in*
sikeigrkrlftfifkr*rrgrrrrgrrrgrgrrrrscqtn*kiikests*i*rkrrr*k
*tynssn*kn*nqyk*s*nqnscirs***q**i*---

---wkxtnhckhfqd*x*w*srxl*n*ktxw*xktxxawxsfnklcfhhftrfxncsx*s
ssxwlxiwkrclfc*lyvxxckxlxnswx**flyvxr*xcig*ncxfgxxylygetxtkf
sfnlgfryc*trsksifpxx*rlyhsxrpndsxst*rcxll*txixrl*ccsssfexsfa
ixklinyi*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO833 (CHO833Q) /CSM/CH/CHO8-B/CHO833Q.Seq.d/                       1166   0.0
CHO733 (CHO733Q) /CSM/CH/CHO7-B/CHO733Q.Seq.d/                        904   0.0
CHS286 (CHS286Q) /CSM/CH/CHS2-D/CHS286Q.Seq.d/                        898   0.0
VHG617 (VHG617Q) /CSM/VH/VHG6-A/VHG617Q.Seq.d/                        896   0.0
SFI255 (SFI255Q) /CSM/SF/SFI2-C/SFI255Q.Seq.d/                        880   0.0
VHH451 (VHH451Q) /CSM/VH/VHH4-C/VHH451Q.Seq.d/                        866   0.0
VHB207 (VHB207Q) /CSM/VH/VHB2-A/VHB207Q.Seq.d/                        827   0.0
SLD235 (SLD235Q) /CSM/SL/SLD2-B/SLD235Q.Seq.d/                        527   e-148
VHM584 (VHM584Q) /CSM/VH/VHM5-D/VHM584Q.Seq.d/                         54   5e-06
VHL657 (VHL657Q) /CSM/VH/VHL6-C/VHL657Q.Seq.d/                         54   5e-06
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ520099|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2  gene).   896   0.0    5
CD068585|CD068585.1 MA2-0002P-V059-B02-U.B MA2-0002 Schistosoma mansoni cDNA clone MA2-0002P-V059-B02.B, mRNA sequence.    72   3e-08  1
CD169680|CD169680.1 MM1-0024T-M080-G03-U.G MM1-0024 Schistosoma mansoni cDNA clone MM1-0024T-M080-G03.G, mRNA sequence.    72   3e-08  1
CD169660|CD169660.1 MM1-0024T-M080-E06-U.G MM1-0024 Schistosoma mansoni cDNA clone MM1-0024T-M080-E06.G, mRNA sequence.    72   3e-08  1
CF445056|CF445056.1 EST681401 normalized cDNA library of onion Allium cepa cDNA clone ACAIF62, mRNA sequence.    48   1e-04  2
CF439652|CF439652.1 EST675997 normalized cDNA library of onion Allium cepa cDNA clone ACAAS01, mRNA sequence.    48   1e-04  2
CX587668|CX587668.1 TTE00026641 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    60   1e-04  1
CX585596|CX585596.1 TTE00021875 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    60   1e-04  1
CX590527|CX590527.1 TTE00031180 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    60   1e-04  1
CX587195|CX587195.1 TTE00021029 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence.    60   1e-04  1
dna update 2005. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ520099_1(AJ520099|pid:none) Dictyostelium discoideum mRNA for ...   303   8e-81
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...   135   2e-30
AK159433_1(AK159433|pid:none) Mus musculus osteoclast-like cell ...   135   3e-30
AK169326_1(AK169326|pid:none) Mus musculus 17 days pregnant adul...   135   3e-30
AK167699_1(AK167699|pid:none) Mus musculus 14 days pregnant adul...   135   3e-30
AK030889_1(AK030889|pid:none) Mus musculus adult male thymus cDN...   135   3e-30
(P11103) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...   134   5e-30
AF126717_1(AF126717|pid:none) Mus musculus msPARP mRNA, complete...   134   5e-30
X65497_1(X65497|pid:none) R.norvegicus mRNA for poly(ADP-ribose)...   134   6e-30
(P27008) RecName: Full=Poly [ADP-ribose] polymerase 1;          ...   134   6e-30
protein update 2009. 4.10
PSORT 

 psg: 0.40  gvh: 0.60  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.03
 nuc: 0.19  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CHO833 is nuc
5' end seq. ID CHO833F
5' end seq. 
>CHO833F.Seq
AAAAACAAATTTAATTAAACTCAATTTTTAAAAAAGATGCCACCAAAGAAAAGACAATTA
TCACAAAGTGATGAAGATGTAAAAACCACTACAACCACTACTACTTCAACATCAACAAAA
CCACTCACTGAAATTTTCGATGGAATTGTATTTTGTTTTTCAGGTACATTTTCAGTAACA
CAAACTGAATTAACAAAAAAAGTTGAAGGTTGTGGCGCATCAACCTCAAAAACATGCACT
GCTAAAGTTACACATTTAGTATCAACTGTAGATGATTTTAAAAAGAATGGTACAGCAGTT
TCAAAAGCTCTCAAATCTGGTATTCCAATTGTAACCGAAGGTTTCATTACTAAATCAATT
GAAGCATCAAAGAAATTGGAAGAAAAAGGTTATTCACTTTCATCTTCAAACGATGACGAA
GAGGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGTTGCCAAA
CCAACTAGAAGATCATCAAAGAAAGCACCAGCTAAATCTGAAGAAAAAGGAGAAGATAAA
AATAAACTTACAACTCGTCCAACTAAAAAAACTAAAACCAATACAAGTGAAGCTGAAACC
AAAACAGCTGCATCAGATCTTGATGATAGCAGTAGTGAATCTGAANNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID CHO833Z
3' end seq. 
>CHO833Z.Seq
NNNNNNNNNNGGTGGAAANAAACCAACCATTGTAAACATTTTCAAGATTGATNGTGATGG
TGAAGCAGATNGTTATAAAACTAAAAAACATNTTGGTAATANAAAACTNTTANGGCATGG
TTNTCGTTTAACAAATTATGCTTCCATCATTTCACAAGGTTTAANAATTGCTCCNCCTGA
AGCTCCAGTTTNTGGTTATANATTTGGAAAAGGTGTTTATTTTGCTGATTGTATGTCNCT
TTNTGCAAANTATTGTANAACAGTTGGATNTAATGATTTTTGTATGTTANTAGGTGATGN
TGCATTGGGTAAAACTGCANATTTGGNTANANATACTTATATGGAGAAACCNCAACCAAA
TTTTCATTCAACTTGGGCTTTAGGTACTGTTGAACCAGATCCAAAAGTATTTTTCCAANA
TANTGAAGGTTGTATCACTCCANACGGCCAAATGATTCCATNTCAACATAAAGGTGTTTN
TTGTTATGAACANCAATANGTCGTTTATGATGTTGCTCAAGTTCNTTTGAAANATCTTTT
GCNATTAANAAATTAATAAACTATATTTAAT
Length of 3' end seq. 571
Connected seq. ID CHO833P
Connected seq. 
>CHO833P.Seq
AAAAACAAATTTAATTAAACTCAATTTTTAAAAAAGATGCCACCAAAGAAAAGACAATTA
TCACAAAGTGATGAAGATGTAAAAACCACTACAACCACTACTACTTCAACATCAACAAAA
CCACTCACTGAAATTTTCGATGGAATTGTATTTTGTTTTTCAGGTACATTTTCAGTAACA
CAAACTGAATTAACAAAAAAAGTTGAAGGTTGTGGCGCATCAACCTCAAAAACATGCACT
GCTAAAGTTACACATTTAGTATCAACTGTAGATGATTTTAAAAAGAATGGTACAGCAGTT
TCAAAAGCTCTCAAATCTGGTATTCCAATTGTAACCGAAGGTTTCATTACTAAATCAATT
GAAGCATCAAAGAAATTGGAAGAAAAAGGTTATTCACTTTCATCTTCAAACGATGACGAA
GAGGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGTTGCCAAA
CCAACTAGAAGATCATCAAAGAAAGCACCAGCTAAATCTGAAGAAAAAGGAGAAGATAAA
AATAAACTTACAACTCGTCCAACTAAAAAAACTAAAACCAATACAAGTGAAGCTGAAACC
AAAACAGCTGCATCAGATCTTGATGATAGCAGTAGTGAATCTGAA----------GGTGG
AAANAAACCAACCATTGTAAACATTTTCAAGATTGATNGTGATGGTGAAGCAGATNGTTA
TAAAACTAAAAAACATNTTGGTAATANAAAACTNTTANGGCATGGTTNTCGTTTAACAAA
TTATGCTTCCATCATTTCACAAGGTTTAANAATTGCTCCNCCTGAAGCTCCAGTTTNTGG
TTATANATTTGGAAAAGGTGTTTATTTTGCTGATTGTATGTCNCTTTNTGCAAANTATTG
TANAACAGTTGGATNTAATGATTTTTGTATGTTANTAGGTGATGNTGCATTGGGTAAAAC
TGCANATTTGGNTANANATACTTATATGGAGAAACCNCAACCAAATTTTCATTCAACTTG
GGCTTTAGGTACTGTTGAACCAGATCCAAAAGTATTTTTCCAANATANTGAAGGTTGTAT
CACTCCANACGGCCAAATGATTCCATNTCAACATAAAGGTGTTTNTTGTTATGAACANCA
ATANGTCGTTTATGATGTTGCTCAAGTTCNTTTGAAANATCTTTTGCNATTAANAAATTA
ATAAACTATATTTAAT
Length of connected seq. 1206
Full length Seq ID -
Full length Seq. -
Length of full length seq. -