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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO822
Library CH
(Link to library)
Clone ID CHO822
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID CHO822P
(Link to Original site)
Representative DNA sequence 
>CHO822 (CHO822Q) /CSM/CH/CHO8-A/CHO822Q.Seq.d/
TGGAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTAT
AAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAA
AATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAAC
ACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCC
ATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACC
AAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGA
ACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAA
TACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAA
TTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATA
TTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTT
TGTTGTXXXXXXXXXXTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTG
ACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGT
ATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTT
TCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATA
CTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCA
TGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCA
ACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTT
AGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNT
ACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAATA
CCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAA
ATCACAAATCACATATGTGTAAAATAAAACTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
gikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNPPT
PIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDE
PFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSY
LRLFGGPNFLINSIDVNKPFV---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSE
TVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSF
QYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGAXAYYFKIPFR
VKKFIGKKF*kkkckfkitnhicvk*n*
Translated Amino Acid sequence (All Frames) 
Frame A:
wnkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyirifnessn
tnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr*
tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywli
fkiiwws*fpy*fh*ck*tfcc---

---lqhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqixsmqa*qfhq
klflfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyxsyltqhh
fnimsqlkklnyxhhqtlvkxmlklnhpnhqmv***vxqlvvlvvlllsvllpitlkylf
v*knl*vknfkkknvnlksqityv*nkt

Frame B:
gikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNPPT
PIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDE
PFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSY
LRLFGGPNFLINSIDVNKPFV---

---ynihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyryxqcklnsfir
ncssfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiixpi*lnii
si*chn*rn*ixsitkr*sxrc*n*iiqtikwfnnrxynw*cwwcscyrcxclll*ntfs
cekiyr*kilkkkm*i*nhkshmckikl

Frame C:
e*klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*ilqh
q*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiqmn
hsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*sllahi
*dylvvlislliplm*inlll---

---TTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSE
TVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSF
QYNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGAXAYYFKIPFR
VKKFIGKKF*kkkckfkitnhicvk*n*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO822 (CHO822Q) /CSM/CH/CHO8-A/CHO822Q.Seq.d/                       1185   0.0
SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/                       1027   0.0
SHE141 (SHE141Q) /CSM/SH/SHE1-B/SHE141Q.Seq.d/                       1027   0.0
SHD314 (SHD314Q) /CSM/SH/SHD3-A/SHD314Q.Seq.d/                       1027   0.0
SHC854 (SHC854Q) /CSM/SH/SHC8-C/SHC854Q.Seq.d/                       1027   0.0
SHC758 (SHC758Q) /CSM/SH/SHC7-C/SHC758Q.Seq.d/                       1027   0.0
SHC478 (SHC478Q) /CSM/SH/SHC4-D/SHC478Q.Seq.d/                       1027   0.0
SHC410 (SHC410Q) /CSM/SH/SHC4-A/SHC410Q.Seq.d/                       1027   0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/                       1027   0.0
SHB354 (SHB354Q) /CSM/SH/SHB3-C/SHB354Q.Seq.d/                       1027   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1027   0.0    2
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1027   0.0    5
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   5e-26  5
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    42   5e-05  15
CR940347|CR940347.1 Theileria annulata genomic DNA chromosome 1 part 1.    38   6e-05  32
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   2e-04  13
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   3e-04  24
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        32   0.002  23
CP000107|CP000107.1 Ehrlichia canis str. Jake, complete genome.    34   0.003  24
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome.    34   0.005  28
dna update 2005. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   316   9e-85
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   301   3e-80
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   301   3e-80
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   301   3e-80
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   301   3e-80
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   301   3e-80
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   300   5e-80
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   288   3e-76
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   288   3e-76
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   288   3e-76
protein update 2009. 4.10
PSORT 

 psg: 1.02  gvh: 0.77  alm: 0.33  top: 0.07  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for CHO822 is exc
5' end seq. ID CHO822F
5' end seq. 
>CHO822F.Seq
TGGAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTAT
AAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAA
AATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAAC
ACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCC
ATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACC
AAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGA
ACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAA
TACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAA
TTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATA
TTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTT
TGTTGTNNNNNNNNNN
Length of 5' end seq. 616
3' end seq. ID CHO822Z
3' end seq. 
>CHO822Z.Seq
NNNNNNNNNNTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTAT
ATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTA
GCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCA
GAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGAT
GATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCAT
TCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCA
TTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAA
ANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATT
GGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAATACCTTTT
CGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACA
AATCACATATGTGTAAAATAAAACTAA
Length of 3' end seq. 627
Connected seq. ID CHO822P
Connected seq. 
>CHO822P.Seq
TGGAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTAT
AAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAA
AATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAAC
ACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCC
ATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACC
AAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGA
ACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAA
TACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAA
TTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATA
TTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTT
TGTTGT----------TTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTG
ACCTATATAAAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGT
ATTTTAGCAATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTT
TCATCAGAAACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATA
CTTGATGATAGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCA
TGCCATTCCGGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCA
ACATCATTTCAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTT
AGTCAAANAGATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNT
ACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCGGTGCTNTTGCCTATTACTTTAAAATA
CCTTTTCGTGTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAA
ATCACAAATCACATATGTGTAAAATAAAACTAA
Length of connected seq. 1223
Full length Seq ID -
Full length Seq. -
Length of full length seq. -