CHO796
Library CH
(Link to library)
Clone ID CHO796
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15285-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHO796 (CHO796Q) /CSM/CH/CHO7-D/CHO796Q.Seq.d/
ATAACACAACACACACAATACTCAATAAAATAAAATAATAATAATAAATAATATTAATAA
CTTATTAAAAACAATAATAATTTATTTCTATAAATATTATATTATCAAATATATTTGTGT
GGGCATAGTGAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
*hnthntq*NKIIIINNINNLLKTIIIYFYKYYIIKYICVGIVKKK---


Translated Amino Acid sequence (All Frames)
Frame A:
itqhtqysik*nnnnk*y**liknnnnlfl*ilyyqiylcghsekk---


Frame B:
*hnthntq*NKIIIINNINNLLKTIIIYFYKYYIIKYICVGIVKKK---


Frame C:
ntthtilnkik****iility*kq**fisiniilsnifvwa**kk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHO796 (CHO796Q) /CSM/CH/CHO7-D/CHO796Q.Seq.d/ 68 4e-11
AFO208 (AFO208Q) /CSM/AF/AFO2-A/AFO208Q.Seq.d/ 68 4e-11
AHN735 (AHN735Q) /CSM/AH/AHN7-B/AHN735Q.Seq.d/ 32 2.1
VSH617 (VSH617Q) /CSM/VS/VSH6-A/VSH617Q.Seq.d/ 30 8.3
VSH210 (VSH210Q) /CSM/VS/VSH2-A/VSH210Q.Seq.d/ 30 8.3
VHN645 (VHN645Q) /CSM/VH/VHN6-B/VHN645Q.Seq.d/ 30 8.3
VHI311 (VHI311Q) /CSM/VH/VHI3-A/VHI311Q.Seq.d/ 30 8.3
SSL863 (SSL863Q) /CSM/SS/SSL8-C/SSL863Q.Seq.d/ 30 8.3
SSL513 (SSL513Q) /CSM/SS/SSL5-A/SSL513Q.Seq.d/ 30 8.3
SSK712 (SSK712Q) /CSM/SS/SSK7-A/SSK712Q.Seq.d/ 30 8.3

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF029849|AF029849.1 AF029849 Entamoeba dispar cDNAs Entamoeba dispar cDNA cloneEDZP0161, mRNA sequence. 44 0.69 1
AF020593|AF020593.2 AF020593 Entamoeba dispar cDNAs Entamoeba dispar cDNA clone EDZP0047, mRNA sequence. 44 0.69 1
CV462822|CV462822.1 CS_hyp_49g10_M13Reverse Blue crab hypodermis, normalized Callinectes sapidus cDNA clone CS_hyp_49g10 5', mRNA sequence. 34 1.0 2
BZ136048|BZ136048.1 CH230-287P20.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-287P20, DNA sequence. 36 1.5 2
AC165798|AC165798.1 Bos taurus clone CH240-158E2, *** SEQUENCING IN PROGRESS ***, 24 unordered pieces. 42 2.7 1
AC073773|AC073773.2 Mus musculus clone RP23-36C18, WORKING DRAFT SEQUENCE, 9 ordered pieces. 42 2.7 1
AC156488|AC156488.2 Bos taurus clone CH240-54C14, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces. 42 2.7 1
AG599041|AG599041.1 Mus musculus molossinus DNA, clone:MSMg01-530G06.TJ, genomic survey sequence. 42 2.7 1
BU718702|BU718702.1 SJM2CMD05 SJM Schistosoma japonicum cDNA, mRNA sequence. 42 2.7 1
AI736665|AI736665.1 sb31h12.y1 Gm-c1012 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1012-96 5' similar to SW:143C_SOYBN Q96452 14-3-3-LIKE PROTEIN C ;, mRNA sequence. 42 2.7 1
dna update 2005. 9. 9
Homology vs Protein

***** No hits found ******

Lambda K H
0.314 0.124 0.379

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 78,388,403
protein update 2009. 4.10
PSORT

psg: 0.77 gvh: 0.16 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for CHO796 is nuc

5' end seq. ID CHO796F
5' end seq.
>CHO796F.Seq
ATAACACAACACACACAATACTCAATAAAATAAAATAATAATAATAAATAATATTAATAA
CTTATTAAAAACAATAATAATTTATTTCTATAAATATTATATTATCAAATATATTTGTGT
GGGCATAGTGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 150
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -