CHO775
Library CH
(Link to library)
Clone ID CHO775
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11129-1
Original site URL
Representative seq. ID CHO775P
(Link to Original site)
Representative DNA sequence
>CHO775 (CHO775Q) /CSM/CH/CHO7-D/CHO775Q.Seq.d/
ATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATAT
GCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTT
CGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCAT
TTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTT
CGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCA
AAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGAT
AGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGT
TATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAA
GGTCGTCCAGGTAGATGTCCAACTTGTAAGAAXXXXXXXXXXTCGAGGGTAACATGATTG
AAAATCAATATATTACACTCAAAACCAAACTCACTCCCACTTGATAAAGATAGTGTAGTT
TATAAAACCTTGGTAGATTATGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATC
TGTGTTCAAGATATTCTTTCACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGG
GCAAAAGATAAGAATAGATTACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCG
ATTGTCTCGCAGGGATTAAGAATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTT
GGTAAAGGTATTTATTTTGCTGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCA
AGTGATTGTCCAACTGCACTTATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAA
TTGAAACATGATACCTATATGGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTA
GGTATGGCTGCTCCTCACAAAGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTA
GTACCATTAGGTAAAATTTCAAAGACTGGTCTCTCAACTTCATGTACTCACAATGAATTC
ATTGTCTATAAAATTGAACAAGTCAGAATCAAATACATCTTAAGAGTTTACAANGAAAAT
AAAATAAAANAAATTTTTAAAATATCCTTAATTTTT
sequence update 2002.10.25
Translated Amino Acid sequence
IVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHH
LKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKD
SIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCK---

---EGNMIENQYITLKTKLTPT**r*csl*nlgrlccq*sr*ti*nqylcsrysft*ere
*k*tfhslgkr*e*itlmaw**vn*fridclagikncsticsknwlqiw*rylfc*ly**
iiqllfhik*lsnctyvim*sftw*he*iet*ylygrgttsip*yksfrygcssqrw*ss
sf*f*wfsstir*nfkdwslnfmysq*ihcl*n*tsqnqihlkslqxk*nkxnf*nilnf


Translated Amino Acid sequence (All Frames)
Frame A:
IVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHH
LKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKD
SIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCK---

---srvt*lkinilhskpnslpldkdsvvyktlvdyvansqdkqfrtnicvqdilslere
neserftpwakdknrlllwhgsrltnfvsivsqglriappsapktgyrfgkgiyfadcis
ksfsycftssdcptalmllcevslgdmnelkhdtymeeaphpfhstkalgmaaphkdgnh
plsdsdglvvplgkisktglstscthnefivykieqvrikyilrvyxenkikxifkisli
f

Frame B:
lliakekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgii
*nvnvhkyhhlqi*ftgntfvgktnyqlkqlifhlksmiqnqhqrykerni*rhygklki
vlpit*rdqqlktsfniikvmliryhqfiyfilsligc*kvvqvdvqlvr---

---rg*hd*ksiyytqnqthshlikiv*fikpw*imlpivkinnlepisvfkiffhlrer
mkvnvsllgqkiridysygmvvg*lisyrlsrrd*ellhhllqklvtdlvkvfillivlv
nhsaivshqvivqlhlcyyvkfhlvt*mn*nmipiwkrhhihsivqkl*vwllltkmvii
lflilmv**yh*vkfqrlvsqlhvltmnslsiklnksesnts*eftxkik*xkflkyp*f

Frame C:
c**qkkngnkkyisl*d*icke**inmfnlskry**rsssywl*nkiktl*wngcimasf
km*mststiiyrfnslgipslgrpiin*nnlffi*kv*skisirgtkreifkgimgs*r*
ycr*legtsn*khhsi**rlc**gitssftsysl*ldvkrssr*msnl*e---

---EGNMIENQYITLKTKLTPT**r*csl*nlgrlccq*sr*ti*nqylcsrysft*ere
*k*tfhslgkr*e*itlmaw**vn*fridclagikncsticsknwlqiw*rylfc*ly**
iiqllfhik*lsnctyvim*sftw*he*iet*ylygrgttsip*yksfrygcssqrw*ss
sf*f*wfsstir*nfkdwslnfmysq*ihcl*n*tsqnqihlkslqxk*nkxnf*nilnf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHO775 (CHO775Q) /CSM/CH/CHO7-D/CHO775Q.Seq.d/ 2302 0.0
VHB303 (VHB303Q) /CSM/VH/VHB3-A/VHB303Q.Seq.d/ 1326 0.0
SHD815 (SHD815Q) /CSM/SH/SHD8-A/SHD815Q.Seq.d/ 1326 0.0
CHQ835 (CHQ835Q) /CSM/CH/CHQ8-B/CHQ835Q.Seq.d/ 1326 0.0
CHI483 (CHI483Q) /CSM/CH/CHI4-D/CHI483Q.Seq.d/ 1326 0.0
AHF461 (AHF461Q) /CSM/AH/AHF4-C/AHF461Q.Seq.d/ 1326 0.0
AHB712 (AHB712Q) /CSM/AH/AHB7-A/AHB712Q.Seq.d/ 1326 0.0
AHA817 (AHA817Q) /CSM/AH/AHA8-A/AHA817Q.Seq.d/ 1326 0.0
AHR444 (AHR444Q) /CSM/AH/AHR4-B/AHR444Q.Seq.d/ 1320 0.0
AHL736 (AHL736Q) /CSM/AH/AHL7-B/AHL736Q.Seq.d/ 1318 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ534948|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene). 1211 0.0 3
AJ520099|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2 gene). 62 2e-14 3
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.002 27
CQ870481|CQ870481.1 Sequence 902 from Patent WO2004074320. 36 0.004 13
AC142355|AC142355.1 Pan troglodytes chromosome 7 clone RP43-22I16, complete sequence. 32 0.017 11
AE016967|AE016967.1 Mycoplasma gallisepticum strain R section 1 of 4 of the complete genome. 36 0.062 13
BX927159|BX927159.10 Zebrafish DNA sequence from clone DKEY-17C23 in linkage group 17. 38 0.087 7
AC025807|AC025807.2 Homo sapiens clone RP11-657G2, WORKING DRAFT SEQUENCE, 15 unordered pieces. 50 0.11 1
AC107307|AC107307.3 Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 50 0.11 1
DU047104|DU047104.1 152001 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0024I07 5, genomic survey sequence. 40 0.11 3
dna update 2005. 9. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X65497_1(X65497|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 186 2e-45
(P27008) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 186 2e-45
PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH... 185 2e-45
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 185 2e-45
AK303340_1(AK303340|pid:none) Homo sapiens cDNA FLJ53442 complet... 184 5e-45
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 184 7e-45
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl... 183 9e-45
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA... 183 9e-45
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF... 183 9e-45
M17081_1(M17081|pid:none) Human placental poly(ADP-ribose) polym... 183 9e-45
protein update 2009. 4.10
PSORT

psg: 0.58 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: mitochondrial
20.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall

>> prediction for CHO775 is nuc

5' end seq. ID CHO775F
5' end seq.
>CHO775F.Seq
ATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATAT
GCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTT
CGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCAT
TTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTT
CGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCA
AAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGAT
AGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGT
TATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAA
GGTCGTCCAGGTAGATGTCCAACTTGTAAGAANNNNNNNNNN
Length of 5' end seq. 522
3' end seq. ID CHO775Z
3' end seq.
>CHO775Z.Seq
NNNNNNNNNNTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACTC
ACTCCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATAG
TCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAGA
GAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGCA
TGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCACC
ATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTAG
TAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTATG
TGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCACC
ACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATCA
TCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTCT
CTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGTCAGAATCAA
ATACATCTTAAGAGTTTACAANGAAAATAAAATAAAANAAATTTTTAAAATATCCTTAAT
TTTT
Length of 3' end seq. 724
Connected seq. ID CHO775P
Connected seq.
>CHO775P.Seq
ATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAATAT
GCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTT
CGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCAT
TTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTT
CGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCA
AAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGAT
AGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGT
TATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAA
GGTCGTCCAGGTAGATGTCCAACTTGTAAGAA----------TCGAGGGTAACATGATTG
AAAATCAATATATTACACTCAAAACCAAACTCACTCCCACTTGATAAAGATAGTGTAGTT
TATAAAACCTTGGTAGATTATGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATC
TGTGTTCAAGATATTCTTTCACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGG
GCAAAAGATAAGAATAGATTACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCG
ATTGTCTCGCAGGGATTAAGAATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTT
GGTAAAGGTATTTATTTTGCTGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCA
AGTGATTGTCCAACTGCACTTATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAA
TTGAAACATGATACCTATATGGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTA
GGTATGGCTGCTCCTCACAAAGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTA
GTACCATTAGGTAAAATTTCAAAGACTGGTCTCTCAACTTCATGTACTCACAATGAATTC
ATTGTCTATAAAATTGAACAAGTCAGAATCAAATACATCTTAAGAGTTTACAANGAAAAT
AAAATAAAANAAATTTTTAAAATATCCTTAATTTTT
Length of connected seq. 1226
Full length Seq ID -
Full length Seq. -
Length of full length seq. -